Evidence map›Paper›PMID 41157636›Full record

ArticleViruses2025

Comparative Transcriptomics Analyses Identify DDX43 as a Cellular Regulator Involved in Suppressing HSV-2 Replication.

Ranqing Cheng, Yuncheng Li, Yuhao Chen, Mudan Zhang, Qinxue Hu, Yalan Liu

Abstract read
In one paragraph

Article in Viruses, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ranqing ChengSavaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China.
Yuncheng LiSavaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China.
Yuhao ChenSavaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China.
Mudan ZhangSavaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China.ORCID 0000-0002-5164-5891
Qinxue HuSavaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China.ORCID 0000-0002-4594-9215
Yalan LiuSavaid Medical School, University of Chinese Academy of Sciences, Beijing 100049, China.ORCID 0000-0003-0464-0964

Funding

National Key Research and Development Program of China 2022YFC2304301National Key Research and Development Program of China 2023YFC2306600National Natural Science Foundation of China 82171736National Natural Science Foundation of China 82472272
6 · The paper itself

Abstract

HSV-2 is the main pathogen causing genital herpes, and its infection increases the infection and transmission of HIV-1. Currently, there are no vaccines to prevent HSV-2 infection or treatment that can fully cure it. Mining key host factors that regulate HSV-2 replication and elucidating their specific regulatory mechanisms are crucial for understanding virus-host interactions and discovering new antiviral targets. In the current study, we identified DDX43 as a cellular factor involved in the suppression of HSV-2 replication through comparative transcriptomic analyses of HSV-2-infected epithelial cells, followed by experimental validation. Comprehensive transcriptomic profiling revealed distinct host cellular gene expression patterns in HeLa and ARPE-19 cell lines post HSV-2 infection. Subsequent orthogonal partial least-squares discriminant analysis (OPLS-DA) pinpointed DDX43 as one of the principal mediators distinguishing the host response between HSV-2-infected HeLa and ARPE-19 cells. Furthermore, overexpression of DDX43 inhibited HSV-2 replication, whereas knockdown of endogenous DDX43 enhanced HSV-2 replication. Additional experiments revealed that human DDX43 inhibits HSV-2 replication in an interferon-independent manner. This study demonstrates that DDX43 serves as a host regulator against HSV-2 infection, underscoring the power of comparative transcriptomics in identifying novel host proteins that modulate viral replications.

Indexed as

DEAD-box RNA HelicasesHerpesvirus 2, HumanHost-Pathogen InteractionsVirus ReplicationCell LineEpithelial CellsGene Expression ProfilingHeLa CellsHumansTranscriptomeDEAD-box RNA HelicasesDDX43HSV-2IFN-βtranscriptomics

Identifiers

PMID41157636
PMCPMC12567652

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.