Evidence map›Paper›PMID 41157585›Full record

ArticleViruses2025

Intra-Host Evolution of SARS-CoV-2 During Persistent Infection of Pediatric COVID-19 Patients.

Charlie R Boyle, Tien Doan, Estefany Rios-Guzman, Jessica Maciuch, Lacy M Simons, Dulce S Garcia, David B Williams, Arghavan Alisoltani, Egon A Ozer, Ramon Lorenzo-Redondo and 1 more

Abstract read
In one paragraph

Article in Viruses, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Charlie R BoyleDivision of Pediatric Infectious Diseases, Anne and Robert H. Lurie Children's Hospital, Chicago, IL 60611, USA.
Tien DoanCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.ORCID 0009-0008-4049-6465
Estefany Rios-GuzmanCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.ORCID 0000-0002-1399-7546
Jessica MaciuchDivision of Allergy and Immunology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0009-0003-5556-3281
Lacy M SimonsCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.ORCID 0000-0003-4041-6775
Dulce S GarciaCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.ORCID 0009-0000-3951-4621
David B WilliamsStanley Manne Children's Research Institute, Ann & Robert H. Lurie Children's Hospital of Chicago, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Arghavan AlisoltaniCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.ORCID 0000-0003-3638-2218
Egon A OzerCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.ORCID 0000-0002-7131-3691
Ramon Lorenzo-RedondoCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.
Judd F HultquistCenter for Pathogen Genomics and Microbial Evolution, Northwestern University Havey Institute for Global Health, Chicago, IL 60611, USA.ORCID 0000-0001-6424-4280

Funding

Targeting Viroporins and Coronavirus M ProteinU19AI171110 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nevan J Krogan · 2022 to 2026
$103.4M
Technology CoreU19AI135964 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RICHARD G WUNDERINK · 2018 to 2026
$24.7M
TRAINING PROGRAM IN IMMUNOLOGY &MOLECULAR PATHOGENESIST32AI007476 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Edward Benjamin Thorp · 1996 to 2026
$6.6M
Viral and Host Dynamics during Pediatric COVID-19 and Respiratory Virus Co-InfectionR01AI177498 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Bria M Coates, Judd F Hultquist · 2024 to 2026
$2.4M
Illumina MiSeq High-Throughput DNA SequencerS10OD032243 · OD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI OZER, EGON ANDERSON · 2023 to 2023
$102k
NIAID NIH HHS R01 AI177498NIAID NIH HHS T32 AI007476NIAID NIH HHS U19 AI135964NIAID NIH HHS U19 AI171110NIH HHS S10 OD032243Quantitative Biosciences Institute Coronavirus Research Group (QCRG) Antiviral Drug Discovery (AViDD) center NIH U19AI171110Successful Clinical Response to Pneumonia Therapy (SCRIPT) Center NIH U19AI135964
6 · The paper itself

Abstract

The Coronavirus disease 2019 (COVID-19) pandemic had a profound global impact, yet children exhibited distinct clinical and epidemiological patterns compared to adults. Pediatric cases of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) were generally characterized by milder disease, lower hospitalization rates, and few long-term sequelae. However, a subset of children developed severe complications such as multisystem inflammatory syndrome in children (MIS-C), highlighting the heterogeneity in disease presentation. Differences in immune system maturity and comorbidities likely contribute to the age-dependent manifestation of SARS-CoV-2 and other respiratory viruses. Persistent SARS-CoV-2 infection, particularly in immunocompromised individuals, has been implicated in the emergence of new viral variants with immune escape characteristics due to ongoing viral replication in the presence of selective pressure. While SARS-CoV-2 evolution in persistently infected adults has been well-documented, it is less clear how the virus evolves during persistent infection in the pediatric population. To address this question, we performed viral whole genome sequencing of longitudinal specimens collected from immunocompetent and immunocompromised pediatric COVID-19 patients. Similarly to what has been observed in adult cohorts, mutations associated with enhanced viral fitness and immune escape arose intra-host over time. Intra-host diversity accumulated at similar rates in immunocompetent and immunocompromised children, though more mutations overall were observed in the immunocompromised cohort due to the longer infection time courses. Overall, we identified similar viral evolutionary trends over the course of infection despite clinical differences in pediatric COVID-19 manifestation and severity. This similarity suggests that persistent infection in children may be an additional, but not unique, source of ongoing viral diversification.

Indexed as

COVID-19Persistent InfectionSARS-CoV-2AdolescentChildChild, PreschoolEvolution, MolecularFemaleGenome, ViralHumansImmunocompromised HostInfantMaleMutationPhylogenyWhole Genome SequencingCoronavirus disease 2019COVID-19intra-host diversitylongitudinal cohortpediatricSARS-CoV-2severe acute respiratory syndrome coronavirusviral evolution

Identifiers

PMID41157585
PMCPMC12567731

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.