Evidence map›Paper›PMID 41157579›Full record

ArticleViruses2025

Comparative Transcriptomics Reveals Novel and Differential Circular RNA Responses Underlying Interferon-Mediated Antiviral Regulation in Porcine Alveolar Macrophages.

Jiuyi Li, Oluwaseun Adeyemi, Laura C Miller, Yongming Sang

Abstract readComparative Study
In one paragraph

Article in Viruses, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jiuyi LiDepartment of Food and Animal Sciences, College of Agriculture, Tennessee State University, Nashville, TN 37209, USA.ORCID 0009-0003-3649-7100
Oluwaseun AdeyemiDepartment of Food and Animal Sciences, College of Agriculture, Tennessee State University, Nashville, TN 37209, USA.
Laura C MillerDiagnostic Medicine and Pathobiology, College of Veterinary Medicine, Kansas State University, 1800 Denison Ave, Manhattan, KS 66506, USA.ORCID 0000-0002-8946-9416
Yongming SangDepartment of Food and Animal Sciences, College of Agriculture, Tennessee State University, Nashville, TN 37209, USA.ORCID 0000-0002-2980-2854

Funding

NSF NSF-IOS-1831988USDA NIFA Evans-Allen-1013186USDA NIFA NIFA AFRI 2020-67016-31347
6 · The paper itself

Abstract

Porcine Reproductive and Respiratory Syndrome (PRRS) causes significant economic losses in the swine industry. Circular RNAs (circRNAs), a class of stable non-coding RNAs, are increasingly recognized as regulators in immune responses and host-virus interactions. This study investigated the genome-wide circRNA responses in porcine alveolar macrophages (PAMs), key cell targets of PRRSV, following treatment with a modified live virus (MLV) vaccine or two interferon (IFN) subtypes (IFN-α1, IFN-ω5). Using RNA sequencing, we identified over 1000 differentially expressed circRNAs across treatment groups, revealing both conserved and distinct expression profiles. Gene Ontology and KEGG pathway analyses indicated that circRNA-associated genes are significantly enriched in immune-related processes and pathways, including cytokine signaling and antiviral defense. Notably, IFN-ω5 treatment induced a pronounced circRNA response, aligning with its potent antiviral activity. We further explored the regulatory potential of these circRNAs by predicting miRNA binding sites, revealing complex circRNA-miRNA interaction networks. Additionally, we assessed the coding potential of differentially expressed circRNAs by identifying open reading frames (ORFs), internal ribosome entry sites (IRESs), and N6-methyladenosine (m

Indexed as

Antiviral AgentsInterferonsMacrophages, AlveolarRNA, CircularTranscriptomeAnimalsGene Expression ProfilingMicroRNAsPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSwineAntiviral AgentsInterferonsMicroRNAsRNA, Circularalveolar macrophagecircular RNAinterferonPorcine Reproductive and Respiratory SyndromePRRS virus

Identifiers

PMID41157579
PMCPMC12567601

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.