Evidence map›Paper›PMID 41154459›Full record

ArticleAntioxidants (Basel, Switzerland)2025

Light-Induced Transcription in Zebrafish Targets Mitochondrial Function and Heme Metabolism.

Alessandra Boiti, Hanna T Weber, Yuhang Hong, Rima Siauciunaite, Sebastian G Gornik, Nicholas S Foulkes, Daniela Vallone

Abstract read
In one paragraph

Article in Antioxidants (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alessandra BoitiBiocentis, 05100 Terni, Italy.ORCID 0009-0000-7987-463X
Hanna T WeberMedical Faculty Mannheim, University of Heidelberg, 68167 Mannheim, Germany.ORCID 0009-0001-3612-8490
Yuhang HongKey Laboratory of Application of Ecology and Environmental Protection in Plateau Wetland of Sichuan, Xichang University, Xichang 615000, China.
Rima SiauciunaiteInstitute of Biological and Chemical Systems-Biological Information Processing (IBCS-BIP), Karlsruhe Institute of Technology (KIT), 76344 Eggenstein-Leopoldshafen, Germany.
Sebastian G GornikCenter for Organismal Studies (COS), University of Heidelberg, 69120 Heidelberg, Germany.ORCID 0000-0002-8026-1336
Nicholas S FoulkesInstitute of Biological and Chemical Systems-Biological Information Processing (IBCS-BIP), Karlsruhe Institute of Technology (KIT), 76344 Eggenstein-Leopoldshafen, Germany.
Daniela ValloneInstitute of Biological and Chemical Systems-Biological Information Processing (IBCS-BIP), Karlsruhe Institute of Technology (KIT), 76344 Eggenstein-Leopoldshafen, Germany.

Funding

Deutsche Forschungsgemeinschaft FO549/3-1Helmholtz Association NACIP (Natural, Artificial and Cognitive Information Processing)
6 · The paper itself

Abstract

In fish cells, light exposure elevates levels of reactive oxygen species (ROS) and stress-activated MAP kinase activity and thereby induces gene transcription. However, we lack a complete understanding of the function and evolution of this regulatory mechanism. Here, we reveal that a set of mitochondrial and heme metabolism genes is transcriptionally induced in zebrafish cells upon exposure to light or elevated ROS. The integrity of D-box and E-box enhancers in these gene promoters is essential for their transcriptional activation. Furthermore, light-induced transcription of mitochondrial and heme metabolism genes is absent in a cell line derived from the blind Somalian cavefish (

Indexed as

cavefishD-boxtranscriptional regulationvertebrate evolutionzebrafish

Identifiers

PMID41154459
PMCPMC12561580

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.