Evidence map›Paper›PMID 41153420›Full record

ArticleGenes2025

Genome-Wide Association Study of Morphological Defects in Nellore Cattle Using a Binary Trait Framework.

Milena A F Campos, Hinayah Rojas de Oliveira, Henrique A Mulim, Eduarda da Silva Oliveira, Pablo Augusto de Souza Fonseca, Gregorio M F de Camargo, Raphael Bermal Costa

Abstract read
In one paragraph

Article in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Milena A F CamposSchool of Veterinary Medicine and Animal Science, Federal University of Bahia, Salvador 40170-110, BA, Brazil.ORCID 0000-0003-2198-235X
Hinayah Rojas de OliveiraDepartment of Animal Sciences, Purdue University, West Lafayette, IN 47907, USA.ORCID 0000-0002-0355-8902
Henrique A MulimDepartment of Animal Sciences, Purdue University, West Lafayette, IN 47907, USA.ORCID 0000-0001-8798-8899
Eduarda da Silva OliveiraDepartment of Animal Sciences, Purdue University, West Lafayette, IN 47907, USA.
Pablo Augusto de Souza FonsecaMountain Livestock Institute (CSIC-ULE), 24346 Leon, Spain.
Gregorio M F de CamargoSchool of Veterinary Medicine and Animal Science, Federal University of Bahia, Salvador 40170-110, BA, Brazil.ORCID 0000-0002-8736-5576
Raphael Bermal CostaSchool of Veterinary Medicine and Animal Science, Federal University of Bahia, Salvador 40170-110, BA, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

objectivesMorphological defects such as limb malformations, cranial asymmetries, loin deviations, jaw misalignments, and navel irregularities are associated with early culling and reduced productivity in beef cattle. In

methodsDepending on the trait, the number of genotyped animals analyzed ranged from 3369 to 23,206, using 385,079 SNPs (after quality control). Analyses were conducted using a linear mixed model framework adapted for binary outcomes.

resultsSignificant associations were identified for four traits: feet and legs, chamfer, hump, and loin. No significant markers were detected for jaw or navel defects, likely due to lower sample sizes and trait incidence. Gene annotation revealed 49 candidate genes related to feet and legs, 4 for chamfer, 4 for hump, and 6 for loin.

conclusionsCandidate genes were enriched for biological functions, including bone remodeling, muscle development, lipid metabolism, and epithelial organization. Overlaps with QTL related to conformation, feed intake, reproductive traits, and carcass quality were also observed. These findings provide novel insights into the genetic control of morphological defects in Nellore cattle and may inform breeding strategies aimed at improving structural soundness.

Indexed as

Genome-Wide Association StudyQuantitative Trait LociAnimalsCattlePhenotypePolymorphism, Single Nucleotidecandidate genesfastGWA-GLMMNellore cattleQTLstructural soundnessthreshold traitzebu

Identifiers

PMID41153420
PMCPMC12562650

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.