Evidence map›Paper›PMID 41152569›Full record

ArticleNature biomedical engineering2026

Improved specificity and efficiency of in vivo adenine base editing therapies with hybrid guide RNAs.

Madelynn N Whittaker, Lauren C Testa, Aidan Quigley, Dominique L Brooks, Sarah A Grandinette, Hooda Said, Garima Dwivedi, Ishaan Jindal, Daphne Volpp, Julia L Hacker and 9 more

Abstract read
In one paragraph

Article in Nature biomedical engineering, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Review
  3. Engineered Transformer Base Editor with Enhanced Editing Efficiency.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Pharmacological readthrough and base editing forMolecular therapy. Nucleic acids · 2026
    Article
  5. Article
  6. Molecular therapy. Advances · 2026
    Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Liver-directed base editing ofMolecular therapy. Nucleic acids · 2025
    Article
  14. Benchmarking matters.Nature biomedical engineering · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Madelynn N Whittaker *Cardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-3382-1134
Lauren C Testa *Cardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Aidan QuigleyCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Dominique L BrooksCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Sarah A GrandinetteCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Hooda SaidDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-2989-0209
Garima DwivediDivision of Infectious Diseases, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ishaan JindalCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-9568-3964
Daphne VolppCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Julia L HackerCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-5216-5016
Ping QuCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Josh Zhiyong WangAgilent Technologies Inc., Santa Clara, CA, USA.
Michael A LevineDivision of Endocrinology and Diabetes, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-0036-7809
Rebecca C Ahrens-NicklasDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Qiaoli LiDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Jefferson Institute of Molecular Medicine, Thomas Jefferson University, Philadelphia, PA, USA.
Kiran MusunuruCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA. kiranmusunuru@gmail.com.ORCID http://orcid.org/0000-0003-3298-0368
Mohamad-Gabriel AlamehDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA. mg.alameh@pennmedicine.upenn.edu.
William H PeranteauThe Center for Fetal Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA. peranteauw@chop.edu.ORCID http://orcid.org/0000-0003-1608-861X
Xiao WangCardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA. xiao8@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0001-7502-8292

Funding

Replication study of in vivo postnatal gene editing for metabolic liver disease in the nonhuman primate modelU19NS132301 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI Beverly L. Davidson · 2023 to 2026
$48.5M
Personalized prime editing as a platform for hepatic inborn errors of metabolismU01TR005355 · NCATS · CHILDREN'S HOSP OF PHILADELPHIA · PI Rebecca Clare Ahrens-Nicklas, Kiran Musunuru · 2024 to 2026
$10.8M
Diagnosis, Prevention, And Treatment Of Cardiovascular Diseases With Genome EditingR35HL145203 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MUSUNURU, KIRAN · 2019 to 2025
$5.7M
Corrective editing to treat phenylketonuriaR01HD110733 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI Xiao Wang · 2024 to 2026
$2.0M
Gene Therapy for PXE: Breaking the Barrier of Ectopic CalcificationR21AR084212 · NIAMS · THOMAS JEFFERSON UNIVERSITY · PI LI, QIAOLI · 2024 to 2025
$357k
American Heart Association (American Heart Association, Inc.) Career Development AwardAmerican Heart Association (American Heart Association, Inc.) Predoctoral FellowshipNational Science Foundation (NSF) Graduate Research FellowshipNCATS NIH HHS U01 TR005355NHLBI NIH HHS R35 HL145203NIAMS NIH HHS R21 AR084212NICHD NIH HHS R01 HD110733NINDS NIH HHS U19 NS132301U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-HD110733U.S. Department of Health & Human Services | National Institutes of Health (NIH) R21-AR084212U.S. Department of Health & Human Services | National Institutes of Health (NIH) U01-TR005355U.S. Department of Health & Human Services | National Institutes of Health (NIH) U19-NS132301
6 · The paper itself

Abstract

Phenylketonuria (PKU), pseudoxanthoma elasticum (PXE) and hereditary tyrosinemia type 1 (HT1) are autosomal recessive disorders linked to the PAH, ABCC6, and FAH and HPD genes, respectively. Here we evaluate the off-target editing profiles of clinical lead guide RNAs (gRNAs) that, when combined with adenine base editors (ABEs), correct the recurrent PAH P281L variant, PAH R408W variant or ABCC6 R1164X variant, or disrupt either of two sites in the HPD gene (a modifier gene of HT1) in human hepatocytes. To mitigate off-target mutagenesis, we systematically screen hybrid gRNAs with DNA nucleotide substitutions. Comprehensive and variant-aware specificity profiling of these hybrid gRNAs reveals dramatically reduced off-target editing and reduced bystander editing in cells. In humanized PAH P281L and ABCC6 R1164X mouse models of PKU and PXE, we show that when formulated in lipid nanoparticles with ABE messenger RNA, selected hybrid gRNAs revert disease phenotypes, reduce off-target editing, increase on-target editing and reduce bystander editing in vivo. These studies highlight the use of hybrid gRNAs to improve the safety and efficiency of adenine base-editing therapies.

Indexed as

AdenineGenetic TherapyRNA, Guide, CRISPR-Cas SystemsAnimalsHumansMiceTyrosinemiasAdenineRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID41152569
PMCPMC13577889

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.