Evidence map›Paper›PMID 41151990›Full record

ArticleThe European respiratory journal2025

The proteomic landscape of blood monocytes in community-acquired pneumonia.

Osoul Chouchane, Erik H A Michels, Giuseppe G F Leite, Alex F de Vos, Justin de Brabander, Joe M Butler, Xanthe Brands, Bastiaan W Haak, Augustijn M Klarenbeek, W Joost Wiersinga and 6 more

Abstract read
In one paragraph

Article in The European respiratory journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Osoul ChouchaneCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0003-1629-8588
Erik H A MichelsCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0001-8145-2444
Giuseppe G F LeiteDivision of Infectious Diseases, Department of Medicine, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil.ORCID https://orcid.org/0000-0003-1848-4480
Alex F de VosCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.
Justin de BrabanderCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0002-3596-5086
Joe M ButlerCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0001-6781-6408
Xanthe BrandsCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.
Bastiaan W HaakCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.
Augustijn M KlarenbeekCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.
W Joost WiersingaCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.
Brendon P SciclunaCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.
Cornelis van 't VeerCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands.
Kathrine F KaasDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark.
Valdemaras PetrosiusDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark.
Erwin M SchoofDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark.
Tom van der PollCentre for Infection and Molecular Medicine (CIMM), Amsterdam University Medical Centre, University of Amsterdam, Amsterdam, The Netherlands t.vanderpoll@amsterdamumc.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionMonocytes play a pivotal role in the regulation of inflammation and pathogen clearance during infection. Knowledge of the human monocyte proteome during infection is limited. We present a comprehensive proteome profile of blood monocytes from patients with community-acquired pneumonia (CAP), one of the most common infectious diseases, and controls without infection.

methodsMonocytes were purified from blood of patients with CAP within 16 h of admission to a general hospital ward and from controls matched for sex, age and comorbidities. Monocyte proteins were measured using liquid chromatography/mass spectrometry. The transcriptome was analysed in the same samples by RNA sequencing. Monocytes were stimulated with lipopolysaccharide for 24 h, after which cytokines were measured in the supernatant.

resultsWe analysed the monocyte proteome of 34 CAP patients and 23 controls. Out of 7315 annotated proteins, 1340 (18.3%) were differentially abundant between groups. Functional enrichment analyses revealed a marked downregulation of mitochondrial respiration processes in patient monocytes; pathways pertaining to cell cycle, cytokine signalling and cell death were upregulated in patient monocytes. Monocyte mRNA levels correlated poorly with the abundance of corresponding proteins and associated functional pathways, raising caution regarding interpretation of functionality estimates based on transcriptome analyses. Differential expression of monocyte proteins had functional and clinical implications as indicated by associations with cytokine production capacity, disease severity and time to clinical stability.

conclusionThis study provides a publicly available monocyte protein atlas that can serve as a resource for future research on monocyte functions during infection.

Indexed as

Community-Acquired InfectionsMonocytesPneumoniaProteomeAgedAged, 80 and overCase-Control StudiesCommunity-Acquired PneumoniaCytokinesFemaleGene Expression ProfilingHumansMaleMiddle AgedProteomicsTranscriptomeCytokinesProteome

Identifiers

PMID41151990
PMCPMC12713393

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.