Evidence map›Paper›PMID 41148508›Full record

ArticleEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology2026

Clonal spread of Mycobacterium monacense strains among patients with extrapulmonary mycobacteriosis.

Christoffel Opperman, Aysha Ahmed, Marianna De Kock, Claudia Spies, Michael Biggel, Tristen Lourens, Sarishna Singh, Yonas Ghebrekristos, Robin Warren, Wynand Goosen and 1 more

Abstract read
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Article in European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Christoffel OppermanNational Health Laboratory Service, Green Point TB-Laboratory, Cape Town, South Africa. christoffel.opperman@nhls.ac.za.ORCID http://orcid.org/0000-0002-6676-5431
Aysha AhmedNational Health Laboratory Service, Green Point TB-Laboratory, Cape Town, South Africa.ORCID http://orcid.org/0009-0004-1014-5104
Marianna De KockSAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Health Sciences, Stellenbosch University, Cape Town, South Africa.ORCID http://orcid.org/0009-0000-4708-4537
Claudia SpiesSAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Health Sciences, Stellenbosch University, Cape Town, South Africa.ORCID http://orcid.org/0009-0009-9580-8777
Michael BiggelInstitute for Food Safety and Hygiene, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-1337-2132
Tristen LourensDepartment of Microbiology and Biochemistry, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontein, South Africa.ORCID http://orcid.org/0000-0001-8005-062X
Sarishna SinghNational Health Laboratory Service, Green Point TB-Laboratory, Cape Town, South Africa.ORCID http://orcid.org/0000-0002-1794-4126
Yonas GhebrekristosNational Health Laboratory Service, Green Point TB-Laboratory, Cape Town, South Africa.ORCID http://orcid.org/0000-0003-2002-5240
Robin WarrenSAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Health Sciences, Stellenbosch University, Cape Town, South Africa.ORCID http://orcid.org/0000-0001-5741-7358
Wynand GoosenSAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Health Sciences, Stellenbosch University, Cape Town, South Africa.ORCID http://orcid.org/0000-0001-6614-9084
Giovanni GhielmettiSAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Health Sciences, Stellenbosch University, Cape Town, South Africa.ORCID http://orcid.org/0000-0002-3936-9687

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThis study presents the phylogenetic and antimicrobial susceptibility characterization of Mycobacterium monacense, a rare nontuberculous mycobacterium (NTM), cultured from clinical extrapulmonary samples.

methodsEight Mycobacterium monacense isolates were identified between 2019 and 2023 in the Western Cape province of South Africa. Whole-genome sequencing (WGS) was applied to assess phylogenetic relatedness, identify virulence factors, and characterize the resistome of the isolates. Antimicrobial susceptibility testing (AST) was performed using the GenoType NTM-DR line probe assay (LPA), Sensititre minimum inhibitory concentrations (MIC) plates, and the proportional method based on critical concentrations. Spatial distribution of cases was mapped using ArcGIS software.

resultsSpatiotemporal distribution patterns indicated the presence of circulating clones confined within specific geographical areas. Plasmids coding for ferredoxin and cytochrome P450 genes were identified in one cluster, which notably lacked the chromosomal mbtH gene involved in siderophore biosynthesis for iron acquisition. In contrast, isolates grouped in a second cluster harbored the mbtH chromosomal gene but lacked these plasmid-associated elements. LPA and broth microdilution showed that all Mycobacterium monacense isolates were susceptible to aminoglycosides, fluoroquinolones, and macrolides, but generally exhibited elevated MICs against β-lactam antibiotics. Phenotypic AST indicated that drugs commonly used to treat Mycobacterium tuberculosis complex (MTBC), namely bedaquiline, linezolid, and rifampicin, are effective against Mycobacterium monacense.

conclusionMycobacterium monacense in extrapulmonary cultures accentuates the need for improved diagnostics and enhanced clinical awareness of infections with rare NTM. WGS highlights the potential significance provided by plasmid-encoded genes. Current treatment regimens for MTBC exhibit therapeutic efficacy against Mycobacterium monacense isolates.

Indexed as

MycobacteriumMycobacterium InfectionsHumansMicrobial Sensitivity TestsMycobacteriaceaeNanopore SequencingPhylogenySouth AfricaWhole Genome SequencingAntimicrobial susceptibility testingExtrapulmonaryMycobacterium monacenseNontuberculous mycobacteriaPlasmidWhole-genome sequencing

Identifiers

PMID41148508
PMCPMC12987876

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.