ArticleCurrent protocols2025
Using BossDB Tools to Access, Visualize, and Share Volumetric Neuroscience Data.
Article in Current protocols, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
2 citing papers in PubMed.
- Analyzing Large Connectome Graphs With BossDB Network Tools.Current protocols · 2025Article
- Using BossDB Tools to Access, Visualize, and Share Volumetric Neuroscience Data.Current protocols · 2025Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
Abstract
BossDB is a free and publicly accessible archive for storing and sharing petascale neuroimaging data. Focused on FAIR (i.e., findable, accessible, interoperable, and reusable) principles, it utilizes cloud-based infrastructure and software tools to facilitate data access and analysis. BossDB specializes in storing volumetric electron microscopy (EM) and X-ray microtomography (XRM) imaging data along with associated segmentations, annotations, meshes, and connectomes. Users can browse, access, download, visualize, analyze, and upload data through a variety of interfaces, including the BossDB website, Python software development kit (SDK), and web application programming interface (API). Here we present step-by-step protocols for using these interfaces and BossDB tools to perform each of these tasks. These protocols target any researcher who is interested in learning more about BossDB public datasets, analyzing high-resolution neuroimaging and connectomics data with software tools, or contributing a project to BossDB's catalog of public and private data. © 2025 The Johns Hopkins University Applied Physics Laboratory LLC. Current Protocols published by Wiley Periodicals LLC. Support Protocol 1: Browsing public data online Basic Protocol 1: Accessing data with Python Basic Protocol 2: Accessing data with data API Basic Protocol 3: Metadata querying via metadata API Basic Protocol 4: Creating a Neuroglancer visualization Support Protocol 2: Creating a BossDB account Basic Protocol 5: Uploading data and metadata Basic Protocol 6: Uploading a small dataset for private use.
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Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.