Evidence map›Paper›PMID 41146337›Full record

ArticleGenome biology2025

The role of FRUITFULL controlling cell cycle during early flower development revealed by time-series snRNA-seq experiments.

Peilin Chen, Xiaocai Xu, Cezary Smaczniak, Bénédicte Desvoyes, Crisanto Gutiérrez, Robert Sablowski, Kerstin Kaufmann, Jose M Muino

Abstract read
In one paragraph

Article in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Peilin Chen *Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität Zu Berlin, Berlin, Germany.
Xiaocai Xu *Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität Zu Berlin, Berlin, Germany.
Cezary SmaczniakPlant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität Zu Berlin, Berlin, Germany.
Bénédicte DesvoyesCentro de Biología Molecular Severo Ochoa, CSIC-UAM, Cantoblanco, Madrid, Spain.
Crisanto GutiérrezCentro de Biología Molecular Severo Ochoa, CSIC-UAM, Cantoblanco, Madrid, Spain.
Robert SablowskiCell and Developmental Biology Department, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Kerstin KaufmannPlant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität Zu Berlin, Berlin, Germany.
Jose M MuinoPlant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität Zu Berlin, Berlin, Germany. jose.muino-acuna@bfr.bund.de.

Funding

BBSRC BB/X01102X/1Ministerio de Ciencia e Innovacion, Spain PID2021-123319NB-I00UKRI Frontier Research Grant EP/X034550/1
6 · The paper itself

Abstract

backgroundStarting from pools of undifferentiated cells, plants generate new organs postembryonically in response to external and endogenous signals. This requires a dynamic coordination of cell division with cellular growth and differentiation regulatory programs. However, little is known about how this coordination is achieved at the molecular level during flower development.

resultsWe used time-series single-nucleus RNA sequencing (snRNA-seq) experiments of synchronized Arabidopsis thaliana flower developmental stages to characterize the transcriptome dynamics and the connections between cell cycle and developmental regulatory programs during early flower development. The results show a bifurcation between transcriptional trajectories corresponding to cell cycle progression and floral development. We identify the regulation of the cell cycle inhibitor KIP-RELATED PROTEIN 2 (KRP2) by FRUITFULL (FUL) as a key regulatory point on this bifurcation point and validate the importance of this regulation in vivo.

conclusionsOur work illustrates how time-series snRNA-seq experiments can be used to identify bifurcation points between regulatory programs and to identify candidate regulators on these bifurcations. In particular, we identify the regulation of KRP2 by FUL as an important regulatory point to balance cell division and developmental differentiation in plants.

Indexed as

ArabidopsisArabidopsis ProteinsCell CycleFlowersRNA, Small NuclearGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantArabidopsis ProteinsRNA, Small NuclearCell cycleFlower developmentPseudo-time inferenceScRNA-seq analysis

Identifiers

PMID41146337
PMCPMC12557869

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.