Evidence map›Paper›PMID 41145887›Full record

ArticleNature neuroscience2025

The neuronal chromatin landscape in brains from individuals with schizophrenia is linked to early fetal development.

Kiran Girdhar, Jaroslav Bendl, Andrew Baumgartner, Karen Therrien, Sanan Venkatesh, Rachel Bercovitch, Deepika Mathur, Pengfei Dong, Samir Rahman, Steven P Kleopoulos and 11 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Kiran Girdhar *Center for Disease Neurogenomics, New York, NY, USA. kiran.girdhar@mssm.edu.ORCID http://orcid.org/0000-0002-5622-042X
Jaroslav Bendl *Center for Disease Neurogenomics, New York, NY, USA.ORCID http://orcid.org/0000-0001-9989-2720
Andrew BaumgartnerPhenome Health, Seattle, WA, USA.
Karen TherrienCenter for Disease Neurogenomics, New York, NY, USA.
Sanan VenkateshCenter for Disease Neurogenomics, New York, NY, USA.
Rachel BercovitchCenter for Disease Neurogenomics, New York, NY, USA.ORCID http://orcid.org/0009-0003-4446-8422
Deepika MathurCenter for Disease Neurogenomics, New York, NY, USA.
Pengfei DongCenter for Disease Neurogenomics, New York, NY, USA.ORCID http://orcid.org/0000-0003-3735-5158
Samir RahmanCenter for Disease Neurogenomics, New York, NY, USA.
Steven P KleopoulosCenter for Disease Neurogenomics, New York, NY, USA.
Ruth MisirCenter for Disease Neurogenomics, New York, NY, USA.
Sarah M ReachCenter for Disease Neurogenomics, New York, NY, USA.
Pavan K AuluckHuman Brain Collection Core, National Institute of Mental Health-Intramural Research Program, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-4799-7904
Stefano MarencoHuman Brain Collection Core, National Institute of Mental Health-Intramural Research Program, Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-2488-2365
David A LewisTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0002-3225-6778
Vahram HaroutunianFriedman Brain Institute, New York, NY, USA.ORCID http://orcid.org/0000-0001-5860-2512
Cory C FunkInstitute for Systems Biology, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-5229-9011
Georgios VoloudakisCenter for Disease Neurogenomics, New York, NY, USA.ORCID http://orcid.org/0000-0002-5729-632X
Gabriel E HoffmanCenter for Disease Neurogenomics, New York, NY, USA.ORCID http://orcid.org/0000-0002-0957-0224
John F FullardCenter for Disease Neurogenomics, New York, NY, USA.ORCID http://orcid.org/0000-0001-9874-2907
Panos RoussosCenter for Disease Neurogenomics, New York, NY, USA. panagiotis.roussos@mssm.edu.ORCID http://orcid.org/0000-0002-4640-6239

Funding

A regulome and transcriptome atlas of fetal and adult human neurogenesisRF1MH128970 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CAI, LONG, HOF, PATRICK R · 2021 to 2021
$5.5M
BLRD VA I01 BX004189NIMH NIH HHS RF1 MH128970ODCDC CDC HHS 75N95019C00049U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01-MH109897U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01-MH110921U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01-MH125246U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) RF1-MH128970U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) U01-MH116442
6 · The paper itself

Abstract

Noncoding variants increase neuropsychiatric disease risk, but our understanding of their cell-type-specific role remains incomplete. We conducted large-scale chromatin accessibility profiling of neurons and non-neurons from 2 neocortical regions in 1,393 libraries. We observed substantial differences in neuronal chromatin accessibility between schizophrenia (SCZ) cases and controls, with upregulated open chromatin regions (OCRs) in neurons associated with SCZ risk loci. A comparison of SCZ-associated OCRs with fetal brain-specific OCRs revealed a strong correlation between upregulated changes in SCZ chromatin and openness in fetal cortical brains, linking disease-related chromatin alterations to neurodevelopment. Here we show that a prominent neuronal trans-regulatory domain containing upregulated OCRs consolidates key neurodevelopmental chromatin signatures and is enriched for immature glutamatergic neurons. These findings link altered adult cortical chromatin states to early developmental mechanisms in SCZ. This study provides a comprehensive cell-type-resolved chromatin accessibility resource for the human cortex and offers insights into the regulatory architecture underlying SCZ risk.

Indexed as

BrainChromatinFetal DevelopmentNeuronsSchizophreniaAdultFemaleHumansMaleChromatin

Identifiers

PMID41145887
PMCPMC12927581

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.