Evidence map›Paper›PMID 41145789›Full record

Reviewnpj antimicrobials and resistance2025

The applications and advantages of nanopore sequencing in bacterial antimicrobial resistance surveillance and research.

Kai Peng, Changan Li, Qiaojun Wang, Xueqiang Xin, Zhiqiang Wang, Ruichao Li

Abstract readReview
In one paragraph

Review in npj antimicrobials and resistance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Systematic Review: Long-Read Sequencing in Algal Studies.International journal of molecular sciences · 2026
    Pooled it
  2. Review
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  5. Human Oral-AssociatedMicroorganisms · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kai PengJiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Changan LiJiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Qiaojun WangJiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Xueqiang XinJiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou, China.
Zhiqiang WangJiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou, China. zqwang@yzu.edu.cn.
Ruichao LiJiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou, China. rchl88@yzu.edu.cn.

Funding

Jiangsu Funding Program for Excellent Postdoctoral Talent 2025ZB846National Key Laboratory of Veterinary Public Health and Safety Open Project Fund 2024SKLVPHS04National Key Research and Development Program of China 2023YFD1800500, 2024YFC3406300the China Postdoctoral Science Foundation 2024M762745
6 · The paper itself

Abstract

Genomics research is essential for understanding the transmission and evolution of bacterial antimicrobial resistance. The development of nanopore long-read sequencing has revolutionized our understanding of the prevalence, spread, and dynamic evolution of bacterial ARGs. This review discusses the applications and advantages of nanopore sequencing technology in the complete bacterial genome construction, rapid ARG detection, and dynamic evolution analysis of multidrug resistance genetic structure. We emphasize the unique advantages of long-read nanopore sequencing in analyzing the genetic contexts of ARGs in both cultured bacteria and microbiota, as well as the rapid turnaround time for clinical bacterial resistance detection. Technical advancements and the future potential for expanding the applications of nanopore sequencing in the field of antimicrobial resistance are discussed.

Identifiers

PMID41145789
PMCPMC12559372

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.