Evidence map›Paper›PMID 41145500›Full record

ArticleNature communications2025

Conserved hydrophilic checkpoints tune FocA-mediated formate:H

Christian Tüting, Kevin Janson, Michelle Kammel, Christian Ihling, Jana Lorenz, Fotis L Kyrilis, Farzad Hamdi, Christopher Erdmann, Andrea Sinz, R Gary Sawers and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Christian Tüting *Interdisciplinary Research Center HALOmem, Charles Tanford Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Straße 3a, Halle (Saale), Germany.ORCID http://orcid.org/0000-0001-6209-4012
Kevin Janson *Interdisciplinary Research Center HALOmem, Charles Tanford Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Straße 3a, Halle (Saale), Germany.ORCID http://orcid.org/0000-0002-8621-6130
Michelle Kammel *Institute of Biology / Microbiology, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle (Saale), Germany.ORCID http://orcid.org/0000-0002-8082-9796
Christian IhlingDepartment of Pharmaceutical Chemistry & Bioanalytics, Institute of Pharmacy, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle (Saale), Germany.ORCID http://orcid.org/0000-0003-2419-4391
Jana LorenzDepartment of Pharmaceutical Chemistry & Bioanalytics, Institute of Pharmacy, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle (Saale), Germany.
Fotis L KyrilisInterdisciplinary Research Center HALOmem, Charles Tanford Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Straße 3a, Halle (Saale), Germany.ORCID http://orcid.org/0000-0002-4040-6289
Farzad HamdiInterdisciplinary Research Center HALOmem, Charles Tanford Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Straße 3a, Halle (Saale), Germany.ORCID http://orcid.org/0000-0002-2155-5000
Christopher ErdmannInstitute of Biology / Microbiology, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle (Saale), Germany.
Andrea SinzDepartment of Pharmaceutical Chemistry & Bioanalytics, Institute of Pharmacy, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle (Saale), Germany.ORCID http://orcid.org/0000-0003-1521-4899
R Gary SawersInstitute of Biology / Microbiology, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, Halle (Saale), Germany. gary.sawers@mikrobiologie.uni-halle.de.ORCID http://orcid.org/0000-0003-0862-2683
Panagiotis L KastritisInterdisciplinary Research Center HALOmem, Charles Tanford Protein Center, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Straße 3a, Halle (Saale), Germany. panagiotis.kastritis@bct.uni-halle.de.ORCID http://orcid.org/0000-0002-1463-8422

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 03Z22HN23
6 · The paper itself

Abstract

FocA belongs to the widespread, evolutionarily ancient formate-nitrite transporter (FNT) family of pentameric anion channels and translocates formic acid bidirectionally. Here, we identify compartmentalized polarity distribution across the complete FocA pore structure - resolved at 2.56 Å - mirrored against a two-fold axis with H209 at its center. A FocA-H209N variant that exhibits an efflux-only channel-like function in vivo reveals a density consistent with formate located directly at N209, abolishing the channel's amphiphilicity. Pyruvate formate-lyase, which generates formate, orients at the cytoplasmic face where formate delivery is regulated by conformational changes in the FocA vestibule. Comparisons with other FNTs suggest a tuning mechanism of formate-specific transport via checkpoints enriched in hydrophilic residues.

Indexed as

Escherichia coliEscherichia coli ProteinsFormatesMembrane Transport ProteinsSymportersCryoelectron MicroscopyHydrophobic and Hydrophilic InteractionsModels, MolecularProtein ConformationEscherichia coli ProteinsFocA protein, E coliFormatesformic acidMembrane Transport ProteinsSymporters

Identifiers

PMID41145500
PMCPMC12559229

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.