Evidence map›Paper›PMID 41144392›Full record

ArticlePloS one2025

Challenges, innovations and considerations for the use of tongue swabs in Mycobacterium tuberculosis complex detection.

Anura David, Keneilwe Peloakgosi-Shikwambani, Zanele Nsingwane, Violet Molepo, Wendy Stevens, Lesley Scott

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anura DavidWits Diagnostics Innovation Hub, Health Sciences Research Office, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.ORCID https://orcid.org/0000-0003-1590-198X
Keneilwe Peloakgosi-ShikwambaniWits Diagnostics Innovation Hub, Health Sciences Research Office, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Zanele NsingwaneWits Diagnostics Innovation Hub, Health Sciences Research Office, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Violet MolepoWits Diagnostics Innovation Hub, Health Sciences Research Office, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Wendy StevensWits Diagnostics Innovation Hub, Health Sciences Research Office, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Lesley ScottWits Diagnostics Innovation Hub, Health Sciences Research Office, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSputum-based testing is most used for diagnosing pulmonary tuberculosis (TB), but non-sputum specimens such as tongue swabs (TS) offer additional approaches for detecting Mycobacterium tuberculosis complex (MTBC). This two-phase study evaluated various storage, transport, and processing conditions to improve MTBC detection using TS tested on quantitative PCR (qPCR) and Xpert MTB/RIF Ultra (Ultra).

methodsAdults (≥18 years) with Ultra-positive sputum were enrolled at a healthcare facility in Johannesburg, South Africa. In Phase 1, five serial TS were collected per participant and transported "dry" at 2-8°C, to the testing laboratory. In Phase 2, seven TS were collected: three stored "dry," two in Tris-EDTA (TE) buffer, and two in PrimeStore® Molecular Transport Medium (MTM). Across both phases, pre-testing methods included heat lysis (HL)-only or HL combined with vortex bead beating (VBB), and storage at varying temperatures before qPCR. Swabs stored in MTM were tested on Ultra.

resultsA paired t-test revealed no statistically significant differences in Ct values between sequentially collected TS (adjusted p > 0.05). Similarly, mean IS6110/IS1081 Ct values did not differ between fresh and frozen samples (t (85) = -0.031, p = 0.98; 95% CI: -0.44 to 0.43). VBB significantly reduced Ct values compared to HL alone (t (85) = -9.67, p = 2.422 x 10-15; 95% CI: -2.44 to -1.61). While storage conditions influenced Ct value and consistency to some extent, mean Ct values varied slightly from 32.48-34.28. Ultra detection improved when TS were processed with MTM and SR buffer.

conclusionsMTBC detection from serially collected TS was variable, but Ct values were consistent across swab order and storage conditions. VBB improved yield on qPCR, and Ultra detection was enhanced with diluted SR buffer, highlighting the value of optimized processing. These findings support the continued development of TS-based TB diagnostics.

Indexed as

Mycobacterium tuberculosisSpecimen HandlingTongueTuberculosis, PulmonaryAdultFemaleHumansMaleMiddle AgedReal-Time Polymerase Chain ReactionSouth AfricaSputum

Identifiers

PMID41144392
PMCPMC12558547

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.