Evidence map›Paper›PMID 41144207›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Use of ncRNAs to Study Host Cell-Parasite Interactions.

Marion L Graham, Xian-Ming Chen

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Marion L GrahamDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, IL, USA.
Xian-Ming ChenDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, IL, USA. xian_m_chen@rush.edu.

Funding

Molecular Basis of Intestinal CryptosporidiosisR01AI116323 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2015 to 2025
$4.2M
LincRNAs in Mucosal Defense to AIDS Opportunistic Pathogen CryptosporidiumR01AI136877 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2018 to 2022
$1.9M
Epithelial exosomes and TLR-mediated mucosal defenseU01AI095532 · NIAID · CREIGHTON UNIVERSITY · PI CHEN, XIAN-MING · 2011 to 2015
$1.5M
MicroRNAs in Epithelial Innate Immunity to C. parvumR01AI071321 · NIAID · MAYO CLINIC ROCHESTER · PI CHEN, XIAN-MING · 2006 to 2010
$1.3M
LncRNA regulation of Type I IFN signaling in intestinal epitheliumR21AI156370 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2021 to 2022
$432k
m6A methylation of IRGM transcripts in epithelial-Cryptosporidium interactionsR21AI177188 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2024 to 2025
$429k
Intestinal Stem Cell Responses to Cryptosporidium InfectionR21AI141325 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2020 to 2021
$415k
NIAID NIH HHS R01 AI071321NIAID NIH HHS R01 AI116323NIAID NIH HHS R01 AI136877NIAID NIH HHS R21 AI141325NIAID NIH HHS R21 AI156370NIAID NIH HHS R21 AI177188NIAID NIH HHS U01 AI095532
6 · The paper itself

Abstract

Noncoding RNAs (ncRNAs) are RNA molecules that do not undergo the process of translation into protein. High-throughput sequencing technology has shown that a large portion of the human genome is transcribed into ncRNAs. ncRNAs can be divided into different categories, including two main categories based on their size: microRNAs (miRNAs), which represent a subclass of endogenous small ncRNAs with an average 22 nucleotide length, and lncRNAs, which represent a subclass of ncRNAs over 200 nucleotides in length. Both of which have been identified in both mammalian and nonmammalian cells. miRNAs and lncRNAs are an essential part of the complex regulatory networks that control numerous biological processes and may play an important role in host defense and/or microbial offense during host-parasite interactions. Here, several methodologies to explore the role for miRNAs and lncRNAs in host-parasite interactions are briefly summarized, including the detection, quantification, and intracellular localization of miRNAs, identification and validation of miRNA targets, functional manipulation of specific miRNAs, mapping of lncRNA occupancy genome wide, and detection of the association between lncRNAs and proteins.

Indexed as

Host-Parasite InteractionsRNA, Long NoncodingRNA, UntranslatedAnimalsHigh-Throughput Nucleotide SequencingHumansMicroRNAsMicroRNAsRNA, Long NoncodingRNA, UntranslatedChIRPHost defenseIn situ hybridizationlncRNALuciferase reporter assaymiRNAncRNAsNorthern blotParasitePCRRIPRNA interferencesiRNAWestern blot

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.