Evidence map›Paper›PMID 41141895›Full record

ArticleComputational statistics2025

Misspecification-robust likelihood-free inference in high dimensions.

Owen Thomas, Raquel Sá-Leão, Hermínia de Lencastre, Samuel Kaski, Jukka Corander, Henri Pesonen

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Article in Computational statistics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Owen ThomasOslo Centre for Biostatistics and Epidemiology, University of Oslo, Oslo, Norway.ORCID 0000-0001-5199-4269
Raquel Sá-LeãoLaboratory of Molecular Microbiology of Human Pathogens, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.
Hermínia de LencastreLaboratory of Molecular Genetics, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.
Samuel KaskiDepartment of Computer Science, Helsinki Institute of Information Technology, Aalto University, Espoo, Finland.
Jukka CoranderOslo Centre for Biostatistics and Epidemiology, University of Oslo, Oslo, Norway.
Henri PesonenOslo Centre for Biostatistics and Epidemiology, Oslo University Hospital, Oslo, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Likelihood-free inference for simulator-based statistical models has developed rapidly from its infancy to a useful tool for practitioners. However, models with more than a handful of parameters still generally remain a challenge for the Approximate Bayesian Computation (ABC) based inference. To advance the possibilities for performing likelihood-free inference in higher dimensional parameter spaces, we introduce an extension of the popular Bayesian optimisation based approach to approximate discrepancy functions in a probabilistic manner which lends itself to an efficient exploration of the parameter space. Our approach achieves computational scalability for higher dimensional parameter spaces by using separate acquisition functions, discrepancies, and associated summary statistics for distinct subsets of the parameters. The efficient additive acquisition structure is combined with exponentiated loss-likelihood to provide a misspecification-robust characterisation of posterior distributions for subsets of model parameters. The method successfully performs computationally efficient inference in a moderately sized parameter space and compares favourably to existing modularised ABC methods. We further illustrate the potential of this approach by fitting a bacterial transmission dynamics model to a real data set, which provides biologically coherent results on strain competition in a 30-dimensional parameter space.

Indexed as

Approximate Bayesian computationBacterial transmission dynamicsHigh-dimensional inferenceLoss likelihoods

Identifiers

PMID41141895
PMCPMC12552272

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.