Evidence map›Paper›PMID 41136486›Full record

ArticleNature communications2025

Large transient assemblies of Apaf1 constitute the apoptosome in cells.

Alicia C Borgeaud, Iva Ganeva, Calvin Klein, Amandine Stooss, Daniela Ross-Kaschitza, Liyang Wu, Joel S Riley, Stephen W G Tait, Thomas Lemmin, Thomas Kaufmann and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alicia C BorgeaudInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.ORCID https://orcid.org/0000-0002-7231-7424
Iva GanevaInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.
Calvin KleinInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0002-0932-7240
Amandine StoossInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.
Daniela Ross-KaschitzaInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-1367-0671
Liyang WuInstitute of Pharmacology, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0001-6930-1993
Joel S RileyCancer Research UK Scotland Institute, Glasgow, UK.ORCID http://orcid.org/0000-0001-9170-5716
Stephen W G TaitCancer Research UK Scotland Institute, Glasgow, UK.ORCID http://orcid.org/0000-0001-7697-132X
Thomas LemminInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0001-5705-4964
Thomas KaufmannInstitute of Pharmacology, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0001-9906-874X
Wanda KukulskiInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland. wanda.kukulski@unibe.ch.ORCID http://orcid.org/0000-0002-2778-3936

Funding

Cancer Research UK (CRUK) A20145Cancer Research UK (CRUK) DRCNPG-Jun22\100011RCUK | Medical Research Council (MRC) MC_UP_1201/8Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 201199Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) R'Equip 198524
6 · The paper itself

Abstract

Upon cell death signals, the apoptotic protease-activating factor Apaf1 and cytochrome c interact to form the apoptosome complex. The apoptosome is crucial for mitochondrial apoptosis, as it activates caspases that dismantle the cell. However, the in vivo assembly mechanism and appearance of the apoptosome remain unclear. We show that upon onset of apoptosis, Apaf1 molecules accumulate into multiple foci per cell. Disassembly of the foci correlates with cell survival. Structurally, Apaf1 foci resemble organelle-sized, cloud-like assemblies. They form through specific interactions with cytochrome c, contain caspase-9, and depend on procaspase-9 expression for their formation. We propose that Apaf1 foci correspond to the apoptosome in cells. Transientness and ultrastructure of Apaf1 foci suggest that the dynamic spatiotemporal organisation of apoptosome components regulates progression of apoptosis.

Indexed as

ApoptosisApoptosomesApoptotic Protease-Activating Factor 1AnimalsCaspase 9Cell SurvivalCytochromes cHeLa CellsHumansMitochondriaAPAF1 protein, humanApoptosomesApoptotic Protease-Activating Factor 1Caspase 9Cytochromes c

Identifiers

PMID41136486
PMCPMC12552632

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.