Evidence map›Paper›PMID 41135526›Full record

ArticleStem cell reports2025

Cell networks in the mouse liver during partial hepatectomy.

Bin Li, Daniel Rodrigo-Torres, Carl Pelz, Brendan Innes, Pamela Canaday, Sunghee Chai, Peter Zandstra, Gary D Bader, Markus Grompe

Abstract read
In one paragraph

Article in Stem cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Bin LiOregon Stem Cell Center, Salem, OR, USA; Department of Pediatrics, Papé Family Institute, Oregon Health & Science University, Portland, OR, USA. Electronic address: libin06@gmail.com.
Daniel Rodrigo-TorresOregon Stem Cell Center, Salem, OR, USA; Department of Pediatrics, Papé Family Institute, Oregon Health & Science University, Portland, OR, USA. Electronic address: drodrigo@ed.ac.uk.
Carl PelzOregon Stem Cell Center, Salem, OR, USA; Department of Pediatrics, Papé Family Institute, Oregon Health & Science University, Portland, OR, USA.
Brendan InnesThe Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Pamela CanadayOregon Stem Cell Center, Salem, OR, USA.
Sunghee ChaiOregon Stem Cell Center, Salem, OR, USA; Department of Pediatrics, Papé Family Institute, Oregon Health & Science University, Portland, OR, USA.
Peter ZandstraMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Gary D BaderThe Donnelly Centre, University of Toronto, Toronto, ON, Canada.
Markus GrompeOregon Stem Cell Center, Salem, OR, USA; Department of Pediatrics, Papé Family Institute, Oregon Health & Science University, Portland, OR, USA. Electronic address: grompem@ohsu.edu.

Funding

TRANSPLANTATION ASSAY FOR LIVER REPOPULATING CELLSR01DK051592 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GROMPE, MARKUS · 1997 to 2015
$4.8M
Mechanisms of bile duct reprogrammingR01DK083355 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GROMPE, MARKUS, STANGER, BEN Z · 2009 to 2020
$4.3M
NIDDK NIH HHS R01 DK051592NIDDK NIH HHS R01 DK083355
6 · The paper itself

Abstract

In solid tissues, homeostasis and post-injury regeneration involve a complex interplay among various cell types. The mammalian liver harbors numerous epithelial and non-epithelial cells, and the global signaling networks governing their interactions are unknown. To unravel the hepatic cell network, we purified 10 different cell populations from normal and regenerative mouse livers. Analyzing their transcriptomes unveiled ligand-receptor interactions and over 50,000 potential cell-cell interactions in both ground state and after partial hepatectomy. Importantly, about half of these differed between the two states, indicating massive changes in the cell network during regeneration. Our study provides the first comprehensive database of potential cell-cell interactions in liver cell homeostasis and regeneration. Leveraging this predictive model, we identified and validated two previously unknown signaling interactions involved in accelerating and delaying liver regeneration. Overall, we provide a novel platform for investigating autocrine/paracrine pathways in tissue regeneration, with broader applications to other complex multicellular systems.

Indexed as

Cell CommunicationHepatectomyLiverLiver RegenerationAnimalsHepatocytesMiceMice, Inbred C57BLSignal TransductionTranscriptomeFACSFstl1liver regenerationpartial hepatectomySfrp1stem cell

Identifiers

PMID41135526
PMCPMC12790737

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.