Evidence map›Paper›PMID 41134195›Full record

ArticleThe plant genome2025

Genome-wide association studies of nutritional traits in peas (Pisum sativum L.) for biofortification.

Carolina Ballén-Taborda, Nathan Johnson, Lucas Boatwright, Tristan Lawrence, Joshua Kay, Nathan Windsor, Amod Madurapperumage, Pushparajah Thavarajah, Leung Tang, Emerson Shipe and 2 more

Abstract read
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Carolina Ballén-TabordaPulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID https://orcid.org/0000-0002-4995-7802
Nathan JohnsonPulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID https://orcid.org/0000-0002-4537-7966
Lucas BoatwrightPulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID https://orcid.org/0000-0003-4371-2457
Tristan LawrencePulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.
Joshua KayPulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID https://orcid.org/0000-0002-3639-6508
Nathan WindsorPulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID https://orcid.org/0009-0002-0371-5856
Amod MadurapperumagePulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID https://orcid.org/0009-0004-7263-7745
Pushparajah ThavarajahPulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.
Leung TangAgilent Technologies, Didcot, UK.
Emerson ShipePulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.
Shiv KumarInternational Center for Agricultural Research in the Dry Areas (ICARDA), New Delhi, India.ORCID https://orcid.org/0000-0001-8407-3562
Dil ThavarajahPulse Quality and Nutritional Breeding, Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID https://orcid.org/0000-0002-4251-7476

Funding

Regulation of Cryptosporidium DevelopmentP20GM146584 · NIGMS · CLEMSON UNIVERSITY · PI KERRY Scot SMITH · 2022 to 2026
$13.5M
Statistical Methods for Gene Regulatory Analysis From Single Cell Genomics DataP20GM139769 · NIGMS · CLEMSON UNIVERSITY · PI ANHOLT, ROBERT R. H, ARNO, GAVIN · 2021 to 2025
$10.8M
National Institute of Food and Agriculture 2021-51300-34895 (1026666)National Institute of Food and Agriculture 2024-51300-43057 (1032751)National Institute of Food and Agriculture (NC-7) SC-1700618National Institute of Food and Agriculture SC-2023-10348 (1032199)NIGMS NIH HHS P20 GM139769NIGMS NIH HHS P20 GM146584
6 · The paper itself

Abstract

Pea (Pisum sativum L.) is a high-nutrient, cool-season legume of increasing relevance in plant-based nutrition and sustainable agriculture. As demand for alternative protein sources increases, improving pea seeds' nutritional content and quality through genomics-assisted breeding has become a priority. Despite its importance, limited research has explored the genetic basis of nutritional traits in pea. In this study, 267 accessions from the United States Department of Agriculture (USDA) Pea Single Plant Plus Collection were evaluated across 3 years at two USDA-certified organic farms in South Carolina to (1) assess phenotypic variation, (2) characterize the population structure and origin, and (3) perform a genome-wide association study (GWAS) using 54,316 single-nucleotide polymorphism markers on five nutritional traits: protein concentration, sulfur-containing amino acids (SAAs), dietary fiber, total starch, and protein digestibility (PDg). Population structure analysis using ADMIXTURE and principal components analyses identified 10 ancestral subpopulations. GWAS identified 17 marker-trait associations for protein, SAA, and PDg, including a genomic hotspot on the proximal end of chromosome 5 associated with both protein and SAA. This region harbors candidate genes involved in seed development, germination, and protein biosynthesis, suggesting potential roles in protein and SAAs accumulation. These findings provide valuable insights into the genetic architecture underlying key nutritional traits and highlight candidate target genes for breeding high-quality, biofortified pea cultivars. This research expands the genetic potential of pea as a sustainable and nutritious crop alternative for plant-based food systems.

Indexed as

BiofortificationGenome-Wide Association StudyPisum sativumGenome, PlantNutritive ValuePhenotypePlant BreedingPolymorphism, Single NucleotideQuantitative Trait Loci

Identifiers

PMID41134195
PMCPMC12551618

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.