Evidence map›Paper›PMID 41131667›Full record

ArticleJournal of chemical information and modeling2025

AstraMEV (AI-Guided Structural Assembly of Multi-Epitope Vaccines) Against Infectious Bronchitis Virus.

Supantha Dey, Hannah Gates, Rahil Salehi, Riza Danurdoro, Sakib Ferdous, Ratul Chowdhury

Erratum issuedAbstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Frontiers in immunology · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Supantha DeyDepartment of Chemical and Biological Engineering, Iowa State University, Ames, Iowa 50011, United States.
Hannah GatesDepartment of Chemical and Biological Engineering, Iowa State University, Ames, Iowa 50011, United States.
Rahil SalehiDepartment of Chemical and Biological Engineering, Iowa State University, Ames, Iowa 50011, United States.
Riza DanurdoroDepartment of Computer Science, Iowa State University, Ames, Iowa 50011, United States.
Sakib FerdousDepartment of Chemical and Biological Engineering, Iowa State University, Ames, Iowa 50011, United States.
Ratul ChowdhuryDepartment of Chemical and Biological Engineering, Iowa State University, Ames, Iowa 50011, United States.ORCID 0000-0003-1957-4613

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious bronchitis virus (IBV) continues to threaten the poultry industry due to its rapid mutation and genetic diversity. We introduce AstraMEV, a predictive structural immunoinformatic platform that leverages genomic screening of 56 IBV genomes to identify conserved epitopes from the nucleocapsid (N) and spike (S) proteins. Two multiepitope vaccine constructs, SmallTope and BigTope, were designed and refined using AI-driven methods such as RFdiffusion and ProteinMPNN to optimize structural stability and immunogenicity. Molecular dynamics simulations confirmed the constructs' stability and effective binding to chicken Toll-like receptor 4 (chTLR4). Crucially, Poisson-Boltzmann calculations revealed that certain computationally derived variant epitopes significantly improved the binding enthalpy, highlighting key interaction domains. Our comprehensive approach demonstrates the feasibility of leveraging computational immunoinformatics for targeted vaccine design. These findings underscore AstraMEV's robust potential for next-generation IBV vaccines and broader applications in combating rapidly evolving pathogens with significant global impact.

Indexed as

EpitopesInfectious bronchitis virusViral VaccinesAnimalsMolecular Dynamics SimulationSpike Glycoprotein, CoronavirusToll-Like Receptor 4EpitopesSpike Glycoprotein, CoronavirusToll-Like Receptor 4Viral Vaccines

Identifiers

PMID41131667
PMCPMC12606634

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.