Evidence map›Paper›PMID 41131101›Full record

ArticleCommunications chemistry2025

Reaction-conditioned generative model for catalyst design and optimization with CatDRX.

Apakorn Kengkanna, Yuta Kikuchi, Takashi Niwa, Masahito Ohue

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Apakorn KengkannaDepartment of Computer Science, School of Computing, Institute of Science Tokyo, Kanagawa, Japan.ORCID http://orcid.org/0009-0003-4503-153X
Yuta KikuchiDepartment of Computer Science, School of Computing, Institute of Science Tokyo, Kanagawa, Japan.ORCID http://orcid.org/0009-0006-4097-3992
Takashi NiwaGraduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan.
Masahito OhueDepartment of Computer Science, School of Computing, Institute of Science Tokyo, Kanagawa, Japan. ohue@comp.isct.ac.jp.ORCID http://orcid.org/0000-0002-0120-1643

Funding

Japan Agency for Medical Research and Development (AMED) JP25ama121026MEXT | Japan Science and Technology Agency (JST) JPMJFR216JMEXT | Japan Society for the Promotion of Science (JSPS) JP23H04880, JP23H04887, JP23H04890
6 · The paper itself

Abstract

Designing effective catalysts is a key process for optimizing catalytic reactions to reduce time and waste during scale-up. Recently proposed approaches, including generative models, show promise in identifying new catalysts. However, they are mostly developed for specific reaction classes and predefined fragment categories without considering reaction components, limiting the exploration of novel catalysts across reaction space. Here, we present CatDRX, a catalyst discovery framework powered by a reaction-conditioned variational autoencoder generative model for generating catalysts and predicting their catalytic performance. The model is pre-trained on a broad reaction database and fine-tuned for downstream reactions. Our approach achieves competitive performance in both yield and related catalytic activity prediction. Additionally, it enables effective generation of potential catalysts given reaction conditions by integrating optimization toward desired properties and validation based on reaction mechanisms and chemical knowledge, as demonstrated in various case studies. This work helps facilitate and advance catalyst design and discovery for chemical and pharmaceutical industries.

Identifiers

PMID41131101
PMCPMC12550025

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.