Evidence map›Paper›PMID 41130960›Full record

ArticleNature communications2025

Fundamental role of spatial positioning of Mycobacterium tuberculosis in mycobacterial survival in macrophages.

Shivani Sahu, Navin Baid, Deepali Aggarwal, Ankita Sharma, Manisha Gun, Sahanawaz Molla, Anunay Sinha, Ambey Prasad Dwivedi, Amit Tuli, Mahak Sharma and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Epigenetic Reprogramming byAntibiotics (Basel, Switzerland) · 2026
    Review
  4. CRISPRi-mediated silencing of the ABC transporterFrontiers in microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Shivani Sahu *CSIR-Institute of Microbial Technology, Chandigarh, India.
Navin Baid *CSIR-Institute of Microbial Technology, Chandigarh, India.
Deepali AggarwalCSIR-Institute of Microbial Technology, Chandigarh, India.
Ankita SharmaCSIR-Institute of Microbial Technology, Chandigarh, India.
Manisha GunCSIR-Institute of Microbial Technology, Chandigarh, India.
Sahanawaz MollaNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, India.ORCID http://orcid.org/0000-0002-2811-0485
Anunay SinhaCSIR-Institute of Microbial Technology, Chandigarh, India.
Ambey Prasad DwivediCSIR-Institute of Microbial Technology, Chandigarh, India.
Amit TuliCSIR-Institute of Microbial Technology, Chandigarh, India.ORCID http://orcid.org/0000-0001-5476-4127
Mahak SharmaIndian Institute of Science Education and Research, Mohali, Punjab, India.ORCID http://orcid.org/0000-0002-4117-4790
Sanjeev KhoslaCSIR-Institute of Microbial Technology, Chandigarh, India.
Varadharajan SundaramurthyNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, India.ORCID http://orcid.org/0000-0003-2562-8518
Ashwani KumarCSIR-Institute of Microbial Technology, Chandigarh, India. ashwani.kumar02@csir.res.in.ORCID http://orcid.org/0000-0002-6240-6810

Funding

DBT India Alliance (Wellcome Trust/DBT India Alliance) IA/S/20/2/505220
6 · The paper itself

Abstract

Mycobacterium tuberculosis is a model intracellular pathogen. The spatial-localization of M. tuberculosis inside macrophages is poorly defined. Here, we determine the spatial-localization of M. tuberculosis inside macrophages with reference to the nucleus. Few M. tuberculosis cells are perinuclear, while most are peripheral. Perinuclear M. tuberculosis are transported to lysosomes, have low Adenosine Triphosphate/Adenosine Diphosphate, are non-replicating, and tolerate front-line anti-tubercular medicines. M. tuberculosis pathogenicity determines its spatial location. Virulent M. tuberculosis strains are peripheral. However, avirulent M. tuberculosis strains or attenuated deletion mutants are transported to lysosomes in the perinuclear area. Early Secreted Antigenic Target-6 and Culture Filtrate Protein-10 play a critical role in inhibiting mycobacterial transport to the perinuclear space. Induction of centripetal transport of pathogenic M. tuberculosis-laden cargoes to perinuclear region enhances M. tuberculosis's delivery to the lysosomes and reduces mycobacterial growth. Interferon-γ directs M. tuberculosis to lysosomes by modulating their perinuclear localization. Interferon-γ upregulates Transmembrane protein 55B and JNK-interacting protein 4 via transcription factor EB. Increased transmembrane protein 55B and JNK-interacting protein 4 levels tether M. tuberculosis-laden cargoes to the dynein motor, causing their perinuclear delivery to lysosomes. These findings shed light on how mycobacterial metabolism, reproduction, and drug susceptibility are connected to virulence-guided spatial localization.

Indexed as

MacrophagesMycobacterium tuberculosisAnimalsAntigens, BacterialBacterial ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell NucleusHumansInterferon-gammaLysosomesMembrane ProteinsMiceMice, Inbred C57BLTuberculosisVirulenceAntigens, BacterialBacterial ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsESAT-6 protein, Mycobacterium tuberculosisInterferon-gammaMembrane ProteinsTcfeb protein, mouse

Identifiers

PMID41130960
PMCPMC12549931

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.