Evidence map›Paper›PMID 41130259›Full record

ReviewProgress in biomedical engineering (Bristol, England)2025

Untangling the fusion of spatial omics and mechanobiology.

Samuel Dembowitz, Felix G Rivera Moctezuma, Nicholas Zhang, Abhijeet Venkataraman, Ahmet F Coskun

Abstract readReview
In one paragraph

Review in Progress in biomedical engineering (Bristol, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. A PIEZO-Gated Mechanotransduction Timing Window Governs Scar Commitment in Wound Healing.Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Samuel DembowitzWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, United States of America.ORCID 0009-0009-4905-3107
Felix G Rivera MoctezumaWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, United States of America.
Nicholas ZhangWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, United States of America.
Abhijeet VenkataramanWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, United States of America.
Ahmet F CoskunWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, United States of America.ORCID 0000-0002-5797-1524

Funding

T32 CTEng (Cellular and Tissue Engineering) Training ProgramT32GM145735 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI Edward A. Botchwey, Andres J Garcia · 2022 to 2026
$2.3M
Dissecting subcellular and cellular organization by spatial molecular neighborhood networksR35GM151028 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI Ahmet F. Coskun · 2023 to 2026
$1.5M
Spatial protein-protein interaction networks in situ by multiplexed proximity ligationR33CA291197 · NCI · GEORGIA INSTITUTE OF TECHNOLOGY · PI Ahmet F. Coskun · 2024 to 2026
$1.1M
NCI NIH HHS R33 CA291197NIGMS NIH HHS R35 GM151028NIGMS NIH HHS T32 GM145735
6 · The paper itself

Abstract

Cellular biophysical properties are increasingly linked to disease development, including muscular dystrophy, cancer, glaucoma, and other conditions. Transcription profiles of various types have been utilized to elucidate the relationship between genes and their regulatory functions. While spatial transcriptomics creates high-resolution maps of gene regulation in tissues, it does not capture the mechanically coordinated responses of cells based on their transcriptional profiles and cell locations. Mechanobiology, on the other hand, studies how cells perceive and respond to forces but lacks genomic information. In this paper, we explore the emergence of an integrative platform called spatial mechano-transcriptomics. This method combines spatial transcriptomic and mechanical data from the same cells within a timeframe suitable for diagnostic procedures. Spatial mechano-transcriptomics examines the relationship between physical properties, including cell membrane stiffness, and differences in the cell's transcription profile, which could be used to predict disease states. Integrating spatial and mechanical observations has the potential to revolutionize precision diagnostics and lead to the development of new therapeutics, resulting in significant advances in biomedical research.

Indexed as

BiophysicsGene Expression ProfilingGenomicsAnimalsBiomechanical PhenomenaHumansTranscriptomemechanotransductionomicsproteomicsspatialtranscriptomics

Identifiers

PMID41130259
PMCPMC12699347

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.