Evidence map›Paper›PMID 41126876›Full record

ArticleFrontiers in genome editing2025

CRISPR/Cas9- and Cas3-mediated modification of copy number variation in rice.

Hyungjun Park, Takeshi Kuroha, Hiroaki Saika, Masaharu Kuroda, Hitoshi Yoshida

Abstract read
In one paragraph

Article in Frontiers in genome editing, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hyungjun ParkInstitute of Agrobiological Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, Japan.
Takeshi KurohaInstitute of Agrobiological Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, Japan.
Hiroaki SaikaInstitute of Agrobiological Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, Japan.
Masaharu KurodaInstitute of Agrobiological Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, Japan.
Hitoshi YoshidaInstitute of Agrobiological Science, National Agriculture and Food Research Organization (NARO), Tsukuba, Ibaraki, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Copy number variation (CNV) is one of the crucial elements among genomic structural variations that span plant breeding. However, its impact on agricultural traits has remained elusive. Methods: We modulated CNVs using two genome-editing technologies, CRISPR/Cas9 and Cas3, along with their verification methods in rice to elucidate the effect of CNVs and further harness to improve relevant agronomic traits. Results: The addition of cytosine extension to the conventional single-guide RNA and its combination with Cas9 generated a frameshift mutation in parts of the Discussion: Altogether, the two technologies are expected to lay the foundation for new approaches to plant breeding by controlling CNV.

Indexed as

copy number variationcytosine extensiongenome editingOsGA20ox1phenotypeplant breedingricetype-I enzyme

Identifiers

PMID41126876
PMCPMC12537685

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.