Evidence map›Paper›PMID 41126529›Full record

ArticleBiophysical journal2025

Epitope mapping of diagnostic antibodies targeting SARS-CoV-2 nucleocapsid protein using hydrogen-deuterium exchange mass spectrometry.

Shaima Muhammed Nazaar, Ankit Jain, Xu Liu, Madison E Platt, Anne M Roberts, Filipp Frank, Eric A Ortlund, Wilbur A Lam, Blaine R Roberts

Abstract read
In one paragraph

Article in Biophysical journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shaima Muhammed NazaarDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia; Department of Neurology, Emory University School of Medicine, Atlanta, Georgia.
Ankit JainDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia; Department of Neurology, Emory University School of Medicine, Atlanta, Georgia.
Xu LiuDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia.
Madison E PlattDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia; Department of Neurology, Emory University School of Medicine, Atlanta, Georgia.
Anne M RobertsDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia; Department of Neurology, Emory University School of Medicine, Atlanta, Georgia.
Filipp FrankDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia.
Eric A OrtlundDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia.
Wilbur A LamDepartment of Pediatrics, Emory University School of Medicine, Atlanta, Georgia; Georgia Institute of Technology, Atlanta, Georgia.
Blaine R RobertsDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia; Department of Neurology, Emory University School of Medicine, Atlanta, Georgia. Electronic address: blaine.roberts@emory.edu.

Funding

Technology Training and Dissemination CoreU54EB027690 · NIBIB · EMORY UNIVERSITY · PI Wilbur A Lam · 2018 to 2026
$96.1M
Rapid Fluorescence-Based Determination of Antibiotic SusceptibilityU54EB015408 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI PARRISH, JOHN A, SCHACHTER, STEVEN · 2012 to 2022
$49.2M
Targeting the orphan nuclear receptor LRH-1 with small moleculesR01DK115213 · NIDDK · EMORY UNIVERSITY · PI John Winter Calvert, Eric A Ortlund · 2017 to 2026
$4.6M
Deciphering the IgG glycosylation code of Alzheimer's DiseaseR01AG085587 · NIA · EMORY UNIVERSITY · PI Blaine Russell Roberts, ERIC JOHN SUNDBERG · 2024 to 2026
$1.6M
Multifaceted Regulation of Mineralocorticoid Receptor Transcriptional ActivitiesR35GM155032 · NIGMS · EMORY UNIVERSITY · PI Xu Liu · 2024 to 2026
$1.3M
NIA NIH HHS R01 AG085587NIBIB NIH HHS U54 EB015408NIBIB NIH HHS U54 EB027690NIDDK NIH HHS R01 DK115213NIGMS NIH HHS R35 GM155032
6 · The paper itself

Abstract

The SARS-CoV-2 nucleocapsid (N) protein is a primary target for diagnostic antibody-based detection of COVID-19. To enhance diagnostic accuracy and resilience against emerging variants, it is essential to map the binding sites of diagnostic antibodies. This study employs hydrogen-deuterium exchange mass spectrometry (HDX-MS) to identify the epitopes of diagnostic antibodies targeting the N protein. HDX-MS provides high-resolution insights into protein-antibody interactions by detecting changes in solvent accessibility and protein dynamics upon antibody binding. Our findings revealed distinct epitopes critical for antibody specificity and binding, highlighting conserved regions of the N protein that are crucial for diagnostic applications. This work demonstrates the value of HDX-MS in guiding the design of robust diagnostic tools, emphasizing its role in understanding antibody interactions and adapting diagnostics to future SARS-CoV-2 variants. These findings support the development of next-generation diagnostics with improved sensitivity, specificity, and durability.

Indexed as

Antibodies, ViralCoronavirus Nucleocapsid ProteinsCOVID-19Epitope MappingHydrogen Deuterium Exchange-Mass SpectrometryPhosphoproteinsSARS-CoV-2EpitopesHumansAntibodies, ViralCoronavirus Nucleocapsid ProteinsEpitopesnucleocapsid phosphoprotein, SARS-CoV-2Phosphoproteins

Identifiers

PMID41126529
PMCPMC12709400

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.