Evidence map›Paper›PMID 41126276›Full record

ArticleCell communication and signaling : CCS2025

Challenges in mimicking hypoxia: insights into HIF-regulated MiRNA expression induced by DMOG and CoCl

Anna Barton, Maciej Jaśkiewicz, Anna Więch-Walów, Adrianna Moszyńska, Aleksandra Cabaj, Ben Wielockx, Liliana Schaefer, James F Collawn, Rafal Bartoszewski

Abstract read
In one paragraph

Article in Cell communication and signaling : CCS, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
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  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Anna Barton *Department of Biophysics, Faculty of Biotechnology, University of Wroclaw, F. Joliot-Curie 14a, Wroclaw, 50- 383, Poland.
Maciej Jaśkiewicz *Laboratory of Photobiology and Molecular Diagnostics, Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, Gdańsk, Poland.
Anna Więch-Walów *Department of Biophysics, Faculty of Biotechnology, University of Wroclaw, F. Joliot-Curie 14a, Wroclaw, 50- 383, Poland.
Adrianna Moszyńska *Department of Biophysics, Faculty of Biotechnology, University of Wroclaw, F. Joliot-Curie 14a, Wroclaw, 50- 383, Poland.
Aleksandra CabajLaboratory of Sequencing, Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Ben WielockxInstitute of Clinical Chemistry and Laboratory Medicine, University Carl Gustav Carus and Medical Faculty, Technische Universität Dresden, Fetscherstrasse 74, Dresden, 01307, Germany.
Liliana SchaeferInstitute of Pharmacology and Toxicology, Goethe University Frankfurt, Frankfurt, Germany.
James F CollawnDepartment of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, Birmingham, AL, 35233, USA.
Rafal BartoszewskiDepartment of Biophysics, Faculty of Biotechnology, University of Wroclaw, F. Joliot-Curie 14a, Wroclaw, 50- 383, Poland. rafal.bartoszewski@uwr.edu.pl.

Funding

German Research Council SFB 1177, 259130777 (F11), SFB 1039 (B02), Cardiopulmonary Institute (CPI) (EXC 2026, 390649896), and LOEWE initiative ACLF-I (P08)Narodowe Centrum Nauki UMO-2015/18/E/NZ3/00687
6 · The paper itself

Abstract

The cellular and tissue response to acute hypoxia is mediated by a complex adaptive response initiated by hypoxia-inducible factors (HIF) 1 and 2. HIF proteins are key transcription factors that modulate gene expression to adapt cells to the low oxygen tension. Cellular studies of hypoxia have used the low oxygen model by using hypoxia chambers to monitor the gene expression changes, while others have utilized hypoxia mimetics in normoxic conditions. Here, we provide a comparison of the utility and limitations of two hypoxia mimetics by studying the changes in the miRNA and mRNA expression profiles compared to the low oxygen model. We utilized data from NGS-based global analyses, qPCR validation, and HIFa silencing experiments to determine the distinct profiles of HIF-1 and HIF-2 activities of the hypoxia and mimetic models. The ability of CoCl

Indexed as

Amino Acids, DicarboxylicBasic Helix-Loop-Helix ProteinsCobaltGene Expression RegulationHypoxia-Inducible Factor 1, alpha SubunitMicroRNAsCell HypoxiaEndothelial PAS Domain-Containing Protein 1HumansHuman Umbilical Vein Endothelial CellsAmino Acids, DicarboxylicBasic Helix-Loop-Helix ProteinsCobaltcobaltous chlorideEndothelial PAS Domain-Containing Protein 1Hypoxia-Inducible Factor 1, alpha SubunitMicroRNAsoxalylglycineEPAS1HIF1AHIF-1αHIF-2αHypoxia mimeticsMicroRNA

Identifiers

PMID41126276
PMCPMC12542114

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.