Evidence map›Paper›PMID 41125606›Full record

ArticleNature communications2025

A multimodal cross-species comparison of pancreas development.

Kaiyuan Yang, Hannah Spitzer, Michael Sterr, Karin Hrovatin, Sean de la O, Xinghao Zhang, Eunike Sawitning Ayu Setyono, Minhaz Ud-Dean, Thomas Walzthoeni, Krzysztof Flisikowski and 10 more

Abstract readComparative Study
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Functional Inactivation ofInternational journal of molecular sciences · 2026
    Article
  5. Review
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Kaiyuan Yang *Institute of Diabetes and Regeneration Research (IDR), Helmholtz Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-5361-2620
Hannah Spitzer *Institute of Computational Biology (ICB), Helmholtz Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-7858-0936
Michael SterrInstitute of Diabetes and Regeneration Research (IDR), Helmholtz Munich, Neuherberg, Germany.
Karin HrovatinInstitute of Computational Biology (ICB), Helmholtz Munich, Neuherberg, Germany.ORCID http://orcid.org/0000-0003-3319-9645
Sean de la ODepartment of Cell and Tissue Biology, University of California, San Francisco, USA.
Xinghao ZhangDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, USA.
Eunike Sawitning Ayu SetyonoInstitute of Diabetes and Regeneration Research (IDR), Helmholtz Munich, Neuherberg, Germany.ORCID http://orcid.org/0009-0008-1863-9028
Minhaz Ud-DeanCore Facility Genomics, Helmholtz Munich, Neuherberg, Germany.
Thomas WalzthoeniCore Facility Genomics, Helmholtz Munich, Neuherberg, Germany.
Krzysztof FlisikowskiChair of Livestock Biotechnology, Department of Molecular Life Sciences, School of Life Sciences, Technical University of Munich, Freising, Germany.
Tatiana FlisikowskaChair of Livestock Biotechnology, Department of Molecular Life Sciences, School of Life Sciences, Technical University of Munich, Freising, Germany.ORCID http://orcid.org/0000-0003-0481-117X
Angelika SchniekeChair of Livestock Biotechnology, Department of Molecular Life Sciences, School of Life Sciences, Technical University of Munich, Freising, Germany.ORCID http://orcid.org/0000-0002-5761-9635
Katharina ScheibnerInstitute of Diabetes and Regeneration Research (IDR), Helmholtz Munich, Neuherberg, Germany.
James M WellsDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, USA.ORCID http://orcid.org/0000-0002-1398-848X
Julie B SneddonDepartment of Cell and Tissue Biology, University of California, San Francisco, USA.ORCID http://orcid.org/0000-0002-7404-8598
Barbara KesslerGerman Center for Diabetes Research (DZD), Neuherberg, Germany.
Eckhard WolfGerman Center for Diabetes Research (DZD), Neuherberg, Germany.ORCID http://orcid.org/0000-0002-0430-9510
Elisabeth KemterGerman Center for Diabetes Research (DZD), Neuherberg, Germany.ORCID http://orcid.org/0000-0001-7785-7502
Fabian J TheisInstitute of Computational Biology (ICB), Helmholtz Munich, Neuherberg, Germany. fabian.theis@helmholtz-munich.de.ORCID http://orcid.org/0000-0002-2419-1943
Heiko LickertInstitute of Diabetes and Regeneration Research (IDR), Helmholtz Munich, Neuherberg, Germany. heiko.lickert@helmholtz-munich.de.ORCID http://orcid.org/0000-0002-4597-8825

Funding

Project-3: Modeling EA/TEF in human organoidsP01HD093363 · NICHD · CINCINNATI CHILDRENS HOSP MED CTR · PI Wendy K Chung, Paul scot Kingma · 2017 to 2026
$16.2M
Maximizing Opportunities for Research Excellence - Evaluation Training SupplementR25GM056847 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DUNCAN, D'ANNE S., SELLO, JASON K · 1998 to 2023
$14.1M
Patient-specific, combinatorial NAMs for gastrointestinal diseases and drug response predictionUM1TR006070 · NCATS · CINCINNATI CHILDRENS HOSP MED CTR · PI LEE ARMISTEAD DENSON, Emily Miraldi · 2026 to 2026
$3.2M
A novel progenitor population in pancreatic endocrine cell developmentR01DK118421 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SNEDDON, JULIE BETH · 2019 to 2023
$2.1M
NCATS NIH HHS UM1 TR006070NICHD NIH HHS P01 HD093363NIDDK NIH HHS R01 DK118421NIGMS NIH HHS R25 GM056847
6 · The paper itself

Abstract

Human pancreas development remains incompletely characterized due to restricted sample access. We investigate whether pigs resemble humans in pancreas development, offering a complementary large-animal model. As pig pancreas organogenesis is unexplored, we first annotate developmental hallmarks throughout its 114-day gestation. Building on this, we construct a pig single-cell multiome pancreas atlas across all trimesters. Cross-species comparisons reveal pigs resemble humans more closely than mice in developmental tempo, epigenetic and transcriptional regulation, and gene regulatory networks. This further extends to progenitor dynamics and endocrine fate acquisition. Transcription factors regulated by NEUROG3, the endocrine master regulator, are over 50% conserved between pig and human, many being validated in human stem cell models. Notably, we uncover that during embryonic development, emerging beta-cell heterogeneity coincides with a species-conserved primed endocrine cell (PEC) population alongside NEUROG3-expressing cells. Overall, our work lays the foundation for comparative investigations and offers unprecedented insights into evolutionarily conserved pancreas organogenesis mechanisms across animal models.

Indexed as

OrganogenesisPancreasAnimalsBasic Helix-Loop-Helix ProteinsFemaleGene Expression Regulation, DevelopmentalGene Regulatory NetworksHumansInsulin-Secreting CellsMiceNerve Tissue ProteinsSingle-Cell AnalysisSpecies SpecificitySwineBasic Helix-Loop-Helix ProteinsNerve Tissue ProteinsNEUROG3 protein, humanNeurog3 protein, mouse

Identifiers

PMID41125606
PMCPMC12546597

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.