Evidence map›Paper›PMID 41124051›Full record

ArticleGigaScience2025

Datagraphy: toward a systematic approach to dataset discovery.

Pascal Petit, Nicolas Vuillerme

Abstract read
In one paragraph

Article in GigaScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Pascal PetitUniv. Grenoble Alpes, AGEIS, 38000 Grenoble, France.ORCID 0000-0001-9015-5230
Nicolas VuillermeUniv. Grenoble Alpes, AGEIS, 38000 Grenoble, France.ORCID 0000-0003-3773-393X

Funding

France 2030 program ANR-23-IACL-0006"Investissements d'avenir" program ANR-10-AIRT-0005"Investissements d'avenir" program ANR-15-IDEX-0002National Research Agency
6 · The paper itself

Abstract

Data have become central to scientific discovery. While primary data collection remains vital, there is growing recognition of the benefits of reusing existing datasets. However, identifying suitable datasets for specific research questions is increasingly difficult due to the fragmentation and heterogeneity of the big data ecosystem. Despite the expansion of data sharing, efficient dataset discovery remains elusive, with limited empirical research on how datasets are identified, interpreted, and reused. Current dataset search practices often lack standardization, leading researchers to rely on convenience rather than systematic criteria. Unlike bibliographic research, dataset selection lacks a formal methodology, increasing the risks of bias, inefficiencies, and reduced generalizability. To address this gap, we introduce datagraphy, a structured approach to dataset identification and evaluation. Analogous to bibliographic methods but designed for datasets, datagraphy encompasses not only discovery but also critical assessment of dataset quality, relevance, interoperability, completeness, sustainability, and ethical use. By formalizing dataset search as a research practice, datagraphy seeks to improve transparency, reproducibility, and interdisciplinary collaboration, while also reducing research redundancy and environmental impact. We present a 9-step framework to operationalize datagraphy and explore challenges such as inconsistent metadata and variability among dataset discovery tools. This framework provides a foundation for systematically and reproducibly identifying and synthesizing reusable datasets. To demonstrate the application of the proposed framework, we conducted a datagraphic search focused on the exposome. We discuss major challenges faced by datagraphy with respect to metadata availability, repository heterogeneity, dataset accessibility, and dataset quality, as well as highlight how datagraphy could enhance transparency, reproducibility, and efficiency at the researcher level. Datagraphy is intended to complement repository-level improvements. Aligning researcher practices with standardized, machine-readable metadata, persistent identifiers, artificial intelligence integration, and lightweight packaging frameworks such as RO-Crates and FAIR (Findable, Accessible, Interoperable, and Reusable) Digital Objects could enable automated discovery and sustainable dataset reuse. By integrating structured researcher-level methodology with systemic improvements and community efforts, datagraphy could offer a scalable approach for systematic, FAIR-aligned data-driven research across disciplines.

Indexed as

Data MiningDatabases, FactualHumansInformation DisseminationMetadatabig datadatagraphic searchdatagraphydata reusedataset discoveryexposomeinformationopen dataopen scienceresearch practice

Identifiers

PMID41124051
PMCPMC12644982

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.