Evidence map›Paper›PMID 41124022›Full record

ArticleGigaScience2025

MRanalysis: a comprehensive online platform for integrated, multimethod Mendelian randomization and associated post-GWAS analyses.

Abao Xing, Tiantian Cai, Haofan Du, Zhifan Li, Hoiman Ng, Junrong Li, Guanmin Jiang, Lijun Chen, Kefeng Li

Abstract read
In one paragraph

Article in GigaScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Abao XingCentre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University, Rua de Luís Gonzaga Gomes, Macao 999078, Macao SR.ORCID 0000-0001-8959-9328
Tiantian CaiBig Data and Internet of Things Program, Faculty of Applied Sciences, Macao Polytechnic University, Rua de Luís Gonzaga Gomes, Macao 999078, Macao SR.ORCID 0009-0008-6606-1881
Haofan DuSchool of Physics and Technology, Nanjing Normal University, Nanjing, Jiangsu 210023, China.ORCID 0009-0005-5775-2603
Zhifan LiBig Data and Internet of Things Program, Faculty of Applied Sciences, Macao Polytechnic University, Rua de Luís Gonzaga Gomes, Macao 999078, Macao SR.ORCID 0009-0001-1852-4318
Hoiman NgClinical laboratory, Kiang Wu Hospital 999078, Macao SR.ORCID 0009-0000-2651-039X
Junrong LiCentre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University, Rua de Luís Gonzaga Gomes, Macao 999078, Macao SR.ORCID 0009-0000-9461-1264
Guanmin JiangDepartment of Clinical Laboratory, The Fifth Affiliated Hospital, Sun Yat-sen University, Zhuhai, Guangdong 519000, China.ORCID 0000-0002-0397-1860
Lijun ChenDepartment of Hematology and Rheumatology, Zhuhai People's Hospital (Zhuhai Hospital affiliated with Jinan University), Zhuhai 519000, China.ORCID 0009-0007-6128-0535
Kefeng LiCentre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University, Rua de Luís Gonzaga Gomes, Macao 999078, Macao SR.ORCID 0000-0002-7233-4347

Funding

Department of Science and Technology of Guangdong Province 0009/2024/AGJMacao Polytechnic University RP/FCA-14/2023Science and Technology Development Funds (FDCT) of Macao 0033/2023/RIB2
6 · The paper itself

Abstract

backgroundMendelian randomization (MR) is a powerful epidemiological method for inferring causal relationships between exposures and outcomes using genome-wide association study (GWAS) data. However, its adoption is limited by inconsistent data formats, lack of standardized workflows, and the need for programming expertise. To address these challenges, we developed MRanalysis, a user-friendly, web-based platform for integrated MR analysis, and GWASkit, a standalone tool for GWAS data preprocessing.

resultsMRanalysis provides a comprehensive, no-code workflow for MR analysis, including data quality assessment, power estimation, single-nucleotide polymorphism to gene enrichment, and visualization. It supports univariable, multivariable, and mediation MR analyses through an intuitive interface. GWASkit facilitates rapid GWAS data preprocessing, such as rs ID conversion and format standardization, with significantly higher accuracy and efficiency than existing tools. Case studies demonstrate the utility and efficiency of both tools in real-world scenarios.

conclusionsMRanalysis and GWASkit lower barriers to MR analysis, making it more accessible, reliable, and efficient. By democratizing MR, these tools can accelerate discoveries in genetic epidemiology, inform public health strategies, and guide targeted interventions. MRanalysis is freely available at https://mranalysis.cn, and GWASkit can be accessed at https://github.com/Li-OmicsLab-MPU/GWASkit. Together, they represent a significant advance in understanding the complex relationships between genes, exposures, and health outcomes.

Indexed as

Genome-Wide Association StudyMendelian Randomization AnalysisSoftwareHumansInternetPolymorphism, Single NucleotideGWASGWASkitMendelian randomizationMRanalysisonline platformrs ID conversionSNP-to-gene enrichmentvisualization

Identifiers

PMID41124022
PMCPMC12616851

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.