Evidence map›Paper›PMID 41120973›Full record

ArticleBMC plant biology2025

Transcriptomic responses of beet to infection by beet mild yellowing virus.

Vinitha Puthanveed, Radha Sivarajan Sajeevan, Abu Bakar Siddique, Erik Alexandersson, Pratikshya Joshi, Per Snell, Britt-Louise Lennefors, Anders Kvarnheden

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Advances in Beet (Plants (Basel, Switzerland) · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Vinitha PuthanveedDepartment of Plant Biology, Swedish University of Agricultural Sciences, Box 7080, Uppsala, 750 07, Sweden.
Radha Sivarajan SajeevanDepartment of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 190, Lomma, 234 22, Sweden.
Abu Bakar SiddiqueDepartment of Plant Biology, Swedish University of Agricultural Sciences, Box 7080, Uppsala, 750 07, Sweden.
Erik AlexanderssonDepartment of Plant Breeding, Swedish University of Agricultural Sciences, Box 190, Lomma, 234 22, Sweden.
Pratikshya JoshiDepartment of Plant Biology, Swedish University of Agricultural Sciences, Box 7080, Uppsala, 750 07, Sweden.
Per SnellDLF Beet Seed AB, Säbyholmsvägen 24, Landskrona, 261 91, Sweden.
Britt-Louise LenneforsDLF Beet Seed AB, Säbyholmsvägen 24, Landskrona, 261 91, Sweden.
Anders KvarnhedenDepartment of Plant Biology, Swedish University of Agricultural Sciences, Box 7080, Uppsala, 750 07, Sweden. anders.kvarnheden@slu.se.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVirus yellows (VY) disease of sugar beet is caused by a complex of aphid-transmitted viruses, including beet mild yellowing virus (BMYV). Neonicotinoids have been used for preventing VY through aphid management, but with the recent ban on neonicotinoids in Europe, the risks for outbreaks of VY have increased dramatically. To study the host responses to BMYV infection and identify the differentially expressed genes (DEGs), we conducted an RNAseq experiment using a resistant genotype of wild beet and a susceptible breeding line of sugar beet. The experiment contained four plant treatments: exposure to aphids with or without BMYV, only insecticide spray and untreated control. Leaves were collected for analyses at 0, 1, 4, 14, 21 and 28 days post-inoculation (DPI).

resultsFollowing BMYV inoculation, resistant plants did not show any chlorosis even at 28 DPI, whereas susceptible plants displayed typical virus symptoms. Using RT-qPCR, BMYV was detected already at 1 DPI in both genotypes. At 14, 21 and 28 DPI, the virus titre in young and inoculated leaves of the susceptible genotype was higher. RNAseq revealed more DEGs as a response to BMYV infection for the susceptible genotype. In inoculated leaves, the number of DEGs increased faster for the susceptible genotype, while in young leaves, the trend was similar for susceptible and resistant genotypes. This shows that the plant responses in inoculated leaves to virus infection appeared at a larger scale in the susceptible genotype. Seven of the significantly upregulated genes in the resistant genotype encoded proteins involved in protein processing in the ER. This could be one mechanism contributing to the absence of symptoms in this genotype.

conclusionsThis study offers new insights into the transcriptomic events and genetic pathways regulating the defence response to BMYV in a partially resistant genotype. We present 14 candidate genes for partial resistance to BMYV and one of the possible mechanisms contributing to reduced virus levels and absence of symptoms. The findings will be of importance for future functional studies to understand the mechanisms of resistance and susceptibility as well as for the breeding of BMYV resistance.

Indexed as

Beta vulgarisClosterovirusPlant DiseasesAgricultureAnimalsAphidsEnzyme-Linked Immunosorbent AssayGene Expression Regulation, PlantGenotypeHost-Parasite InteractionsInsect VectorsPlant BreedingPlant LeavesQuantitative Trait LociReal-Time Polymerase Chain ReactionSingle-Cell Gene Expression AnalysisDifferential gene expressionEndoplasmic reticulum mediated stress toleranceTranscriptome responseVirus resistanceVirus yellows

Identifiers

PMID41120973
PMCPMC12538817

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.