Evidence map›Paper›PMID 41120930›Full record

ArticleBMC genomic data2025

A chromosome-level genome assembly of Verticillium albo-atrum, an dangerous quarantine pathogen known for causing verticillium wilt.

Yang Chen, Yunfang Chen, Yanfeng Deng, Zhenchuan Mao, Yan Li, Jianlong Zhao, Guohua Chen, Jian Ling

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yang Chen *State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Yunfang Chen *Comprehensive Technology Center of Suzhou Customs, Suzhou, China.
Yanfeng DengComprehensive Technology Center of Suzhou Customs, Suzhou, China.
Zhenchuan MaoState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Yan LiState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Jianlong ZhaoState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Guohua ChenState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. chenguohuacaas@126.com.
Jian LingState Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. lingjian@caas.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesVerticillium albo-atrum is one of the most dangerous quarantine pathogen, which is a soil-borne pathogen known for causing verticillium wilt, a disease that affects a wide range of plants, including many economically important crops. However, the lack of high-quality genome resource has greatly limited the research of molecular and evolutionary mechanisms of Verticillium albo-atrum. The highly-quality genome of Verticillium albo-atrum provides a valuable resource for better understanding of the biological characteristics. DATA DESCRIPTION: We sequenced and assembled the genome of Verticillium albo-atrum using ONT long reads combined with DNBSEQ-T7 paired-end short reads and anchored 11 contigs into 8 chromosomes using Hi-C chromatin contact information, yielding a 35.95 Mb chromosome-level genome assembly with a N50 of 4.20 Mb. In addition, transcript-based annotation identified 9967 protein-coding genes, of which 84.17% were functionally annotated. BUSCO analysis demonstrated that this genome assembly has a high-level completeness of 96.47% gene coverage.

Indexed as

Chromosomes, FungalGenome, FungalPlant DiseasesVerticilliumMolecular Sequence AnnotationGenome assemblyHi-C chromatin contact informationVerticillium albo-atrum

Identifiers

PMID41120930
PMCPMC12542403

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.