Evidence map›Paper›PMID 41115894›Full record

ArticleNature communications2025

Optineurin is an adaptor protein for ubiquitinated substrates in Golgi membrane-associated degradation.

Yoichi Nibe-Shirakihara, Shinya Honda, Satoko Arakawa, Satoru Torii, Hajime Tajima Sakurai, Hirofumi Yamaguchi, Shigeru Oshima, Ryuichi Okamoto, Michael Lazarou, Hideshi Kawakami and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Deubiquitination of Vangl by USP6 and USP32 Regulates Planar Cell Polarity Signaling.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yoichi Nibe-ShirakiharaDepartment of Pathological Cell Biology, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, 2-3-10 Kanda Surugadai, Chiyoda-ku, Tokyo, Japan. ynibe.pcb@tmd.ac.jp.ORCID http://orcid.org/0009-0005-9843-6674
Shinya HondaDepartment of Pathological Cell Biology, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, 2-3-10 Kanda Surugadai, Chiyoda-ku, Tokyo, Japan.
Satoko ArakawaDepartment of Pathological Cell Biology, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, 2-3-10 Kanda Surugadai, Chiyoda-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0002-4375-1643
Satoru ToriiDepartment of Pathological Cell Biology, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, 2-3-10 Kanda Surugadai, Chiyoda-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0003-4841-7131
Hajime Tajima SakuraiDepartment of Pathological Cell Biology, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, 2-3-10 Kanda Surugadai, Chiyoda-ku, Tokyo, Japan.
Hirofumi YamaguchiDepartment of Pathological Cell Biology, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, 2-3-10 Kanda Surugadai, Chiyoda-ku, Tokyo, Japan.
Shigeru OshimaDepartment of Gastroenterology and Hepatology, Graduate School, Institute of Science Tokyo, 1-5-45 Yushima, Bunkyo-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0003-1186-9177
Ryuichi OkamotoDepartment of Gastroenterology and Hepatology, Graduate School, Institute of Science Tokyo, 1-5-45 Yushima, Bunkyo-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0002-7047-571X
Michael LazarouDepartment of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, Australia.ORCID http://orcid.org/0000-0003-2150-5545
Hideshi KawakamiDepartment of Epidemiology, Research Institute for Radiation Biology and Medicine, Hiroshima University, Hiroshima, Japan.ORCID http://orcid.org/0000-0002-1405-0901
Shigeomi ShimizuDepartment of Pathological Cell Biology, Advanced Research Initiative, Institute of Integrated Research, Institute of Science Tokyo, 2-3-10 Kanda Surugadai, Chiyoda-ku, Tokyo, Japan. shimizu.pcb@mri.tmd.ac.jp.ORCID http://orcid.org/0000-0002-8437-0791

Funding

Department of Health | National Health and Medical Research Council (NHMRC) GNT1106471Japan Agency for Medical Research and Development (AMED) JP21wm0525028Japan Agency for Medical Research and Development (AMED) JP23gm1410012Japan Agency for Medical Research and Development (AMED) JP24ama221130Japan Agency for Medical Research and Development (AMED) JP24ek0109770MEXT | Japan Society for the Promotion of Science (JSPS) 19K16119MEXT | Japan Society for the Promotion of Science (JSPS) 20H00467MEXT | Japan Society for the Promotion of Science (JSPS) 20K07353MEXT | Japan Society for the Promotion of Science (JSPS) 22K07345MEXT | Japan Society for the Promotion of Science (JSPS) 23H05480MEXT | Japan Society for the Promotion of Science (JSPS) 23K05748MEXT | Japan Society for the Promotion of Science (JSPS) 24K11166Ministry of Education, Culture, Sports, Science and Technology (MEXT) 22H04639Ministry of Education, Culture, Sports, Science and Technology (MEXT) 23H04773Ministry of Education, Culture, Sports, Science and Technology (MEXT) 24H01887
6 · The paper itself

Abstract

Golgi membrane-associated degradation (GOMED) is a process that leading to the degradation of proteins that have passed through the trans-Golgi membranes upon Golgi stress. GOMED is morphologically similar to autophagy, but the substrates degraded are different, and they thus have different biological roles. Although the substrate recognition mechanism of autophagy has been clarified in detail, that of GOMED is completely unknown. Here we report that GOMED degrades its substrate proteins selectively via optineurin (OPTN), as we found that the degradation of GOMED substrates is s`uppressed by the loss of OPTN. OPTN binds to K33 polyubiquitin-tagged proteins that have passed through the Golgi, which are then incorporated into GOMED structures for eventual degradation. In vivo, GOMED is known to be involved in the removal of mitochondria from erythrocytes, and in Optn-deficient mice, mitochondria are not degraded by GOMED, resulting in the appearance of erythrocytes containing mitochondria. These findings provide insight into the substrate recognition mechanism of GOMED.

Indexed as

Golgi ApparatusIntracellular MembranesTranscription Factor TFIIIAAnimalsCell Cycle ProteinsHEK293 CellsHeLa CellsHumansMembrane Transport ProteinsMiceMice, KnockoutMitochondriaProteolysisUbiquitinationCell Cycle ProteinsMembrane Transport ProteinsOPTN protein, humanOptn protein, mouseTranscription Factor TFIIIA

Identifiers

PMID41115894
PMCPMC12537940

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.