Evidence map›Paper›PMID 41115886›Full record

ArticleScientific data2025

A dataset of chemical reaction pathways incorporating halogen chemistry.

Minhyeok Lee, Jinyoung Jeong, Islambek Ashyrmamatov, Umit V Ucak, Sunwoo Kim, Juyong Lee, Eunji Sim

Erratum issuedAbstract read
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Minhyeok Lee *Department of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.ORCID http://orcid.org/0009-0002-7858-351X
Jinyoung Jeong *Department of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.ORCID http://orcid.org/0009-0003-1905-6485
Islambek AshyrmamatovCollege of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea.
Umit V UcakResearch Institute of Pharmaceutical Science, College of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea.ORCID http://orcid.org/0000-0002-9088-0915
Sunwoo KimDepartment of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.ORCID http://orcid.org/0009-0001-0108-0781
Juyong LeeCollege of Pharmacy, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Republic of Korea. nicole23@snu.ac.kr.
Eunji SimDepartment of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea. esim@yonsei.ac.kr.ORCID http://orcid.org/0000-0002-4139-0960

Funding

MOE | Korea Environmental Industry and Technology Institute (KEITI) RS-2023-00219144National Research Foundation of Korea (NRF) 2022M3E5F3081268National Research Foundation of Korea (NRF) NRF-RS-2025-00554671National Research Foundation of Korea (NRF) RS-2024-00352229
6 · The paper itself

Abstract

Machine learning interatomic potentials (MLIPs) promise to revolutionize computational chemistry; however, their performance depends critically on the quality and diversity of the training data. Existing quantum chemical datasets predominantly focus on equilibrium structures and exhibit limited halogen coverage, despite halogens being present in approximately 25% of pharmaceuticals and numerous materials. We present Halo8, a comprehensive dataset that addresses this gap by systematically incorporating fluorine, chlorine, and bromine chemistry into reaction pathway sampling. Using our efficient multi-level computational workflow, which achieves a 110-fold speedup over pure DFT approaches, Halo8 comprises approximately 20 million quantum chemical calculations from 19,000 unique reaction pathways. The dataset combines recalculated Transition1x reactions with new halogen-containing molecules from GDB-13, employing systematic halogen substitution to maximize chemical diversity. All calculations were performed at the ωB97X-3c level, providing accurate energies, forces, dipole moments, and partial charges. Validation demonstrates that Halo8 captures diverse structural distortions and chemical environments essential for reactive systems, serving as a valuable resource for training MLIPs applicable to pharmaceutical discovery, materials design, and catalysis.

Identifiers

PMID41115886
PMCPMC12537968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.