Evidence map›Paper›PMID 41115860›Full record

ArticleNature communications2025

Physics-based evolution of transmembrane helices reveals mechanisms of cholesterol attraction.

Jeroen Methorst, Nino Verwei, Christian Hoffmann, Paweł Chodnicki, Roberto Sansevrino, Partha Pyne, Han Wang, Niek van Hilten, Dennis Aschmann, Alexander Kros and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jeroen MethorstLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-4507-4882
Nino VerweiLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-2464-6896
Christian HoffmannLaboratory of Molecular Neuroscience, German Center for Neurodegenerative Diseases (DZNE), Berlin, Germany.ORCID http://orcid.org/0000-0003-3478-2410
Paweł ChodnickiDepartment of Physical Chemistry, Gdańsk University of Technology, Gdańsk, Poland.ORCID http://orcid.org/0000-0003-4563-2469
Roberto SansevrinoLaboratory of Molecular Neuroscience, German Center for Neurodegenerative Diseases (DZNE), Berlin, Germany.
Partha PyneDepartment of NMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Han WangLaboratory of Molecular Neuroscience, German Center for Neurodegenerative Diseases (DZNE), Berlin, Germany.ORCID http://orcid.org/0009-0000-5517-3038
Niek van HiltenLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-1204-2489
Dennis AschmannLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Alexander KrosLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-3983-3048
Loren AndreasDepartment of NMR-based Structural Biology, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Jacek CzubDepartment of Physical Chemistry, Gdańsk University of Technology, Gdańsk, Poland.ORCID http://orcid.org/0000-0003-3639-6935
Dragomir MilovanovicLaboratory of Molecular Neuroscience, German Center for Neurodegenerative Diseases (DZNE), Berlin, Germany.ORCID http://orcid.org/0000-0002-6625-1879
Herre Jelger RisseladaLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands. jelger.risselada@tu-dortmund.de.ORCID http://orcid.org/0000-0003-1410-6570

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The existence of linear cholesterol-recognition motifs in transmembrane domains has long been debated. Evolutionary molecular dynamics (Evo-MD) simulations-genetic algorithms guided by (coarse-grained) molecular force-fields-reveal that thermodynamic optimal cholesterol attraction in isolated alpha-helical transmembrane domains occurs when multiple consecutive lysine/arginine residues flank a short hydrophobic segment. These findings are supported by atomistic simulations and solid-state NMR experiments. Our analyses illustrate that linear motifs in transmembrane domains exhibit weak binding affinity for cholesterol, characterized by sub-microsecond residence times, challenging the predictive value of linear CRAC/CARC motifs for cholesterol binding. Membrane protein database analyses suggest even weaker affinity for native linear motifs, whereas live cell assays demonstrate that optimizing cholesterol binding restricts transmembrane domains to the endoplasmic reticulum post-translationally. In summary, these findings contribute to our understanding of cholesterol-protein interactions and offer insight into the mechanisms of protein-mediated cholesterol regulation within membranes.

Indexed as

Cell MembraneCholesterolMembrane ProteinsAmino Acid MotifsEndoplasmic ReticulumHumansHydrophobic and Hydrophilic InteractionsMolecular Dynamics SimulationProtein BindingThermodynamicsCholesterolMembrane Proteins

Identifiers

PMID41115860
PMCPMC12537875

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.