Evidence map›Paper›PMID 41112041›Full record

ArticleiMeta2025

PSOSP uncovers pervasive SOS-independent prophages with distinct genomic and host traits in bacterial genomes.

Yali Hao, Mujie Zhang, Xinjuan Lei, Chengrui Zhu, Taoliang Zhang, Yanping Zheng, Xiang Xiao, Huahua Jian

Abstract readLetter
In one paragraph

Article in iMeta, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yali HaoState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology Shanghai Jiao Tong University Shanghai China.ORCID https://orcid.org/0009-0002-8882-4110
Mujie ZhangState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology Shanghai Jiao Tong University Shanghai China.
Xinjuan LeiState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology Shanghai Jiao Tong University Shanghai China.
Chengrui ZhuState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology Shanghai Jiao Tong University Shanghai China.
Taoliang ZhangYazhou Bay Institute of Deepsea Science and Technology, Hainan Research Institute Shanghai Jiao Tong University Sanya China.
Yanping ZhengCenter for Precision Medicine The First Affiliated Hospital of Xiamen University, School of Medicine, Xiamen University Xiamen China.
Xiang XiaoState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology Shanghai Jiao Tong University Shanghai China.
Huahua JianState Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Development Sciences, School of Life Sciences and Biotechnology Shanghai Jiao Tong University Shanghai China.ORCID https://orcid.org/0000-0001-5507-497X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prophages are ubiquitously present in bacterial genomes, significantly influencing host physiological and ecological functions. We present Prophage SOS-dependency Predictor (PSOSP), a novel bioinformatics tool that predicts prophages induction modes by analyzing the Heterology Index (

Identifiers

PMID41112041
PMCPMC12527982

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.