Evidence map›Paper›PMID 41110987›Full record

ArticleJournal of microbiology and biotechnology2025

Multiomics Integration Reveals Microbial Gene Interactions Shaping Host Responses in a DSS-Induced Colitis Mouse Model.

Hyun-Hee Hong, Seo-Yeong Lee, Da Hae Jang, Si-Eun Ju, Ji Eun Shim, Tae-Hwan Kim, Hyung-Sik Kang, Su-Man Kim

Abstract read
In one paragraph

Article in Journal of microbiology and biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Preventive Effects of Fermented Yak Milk-DerivedFoods (Basel, Switzerland) · 2026
    Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hyun-Hee HongSchool of Biological Sciences and Technology, Chonnam National University, Gwangju 61186, Republic of Korea.
Seo-Yeong LeeSchool of Biological Sciences and Technology, Chonnam National University, Gwangju 61186, Republic of Korea.
Da Hae JangSchool of Biological Sciences and Technology, Chonnam National University, Gwangju 61186, Republic of Korea.
Si-Eun JuSchool of Biological Sciences and Technology, Chonnam National University, Gwangju 61186, Republic of Korea.
Ji Eun ShimSchool of Biological Sciences and Technology, Chonnam National University, Gwangju 61186, Republic of Korea.
Tae-Hwan KimCollege of Veterinary Medicine, Chungnam National University, Daejeon 34134, Republic of Korea.
Hyung-Sik KangSchool of Biological Sciences and Technology, Chonnam National University, Gwangju 61186, Republic of Korea.
Su-Man KimDepartment of Biology Education, Chonnam National University, Gwangju 61186, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) has been studied with a multi-omics approach to identify key contributors and unravel the biological complexity of its pathogenesis, aiding in the development of early diagnostic markers and therapeutic targets. The dextran sulfate sodium (DSS)-induced colitis mouse model, a widely used system for studying IBD, induces gut barrier disruption and proinflammatory responses, making it an ideal model for investigating host-microbiome interactions. This study emphasizes the intricate relationship between microbial transcriptomic changes and host immune responses, revealing regulation of microbial genes, particularly in metabolic pathways related to carbohydrate metabolism, nucleotide metabolism, and aminoacyl-tRNA biosynthesis under inflammatory conditions. We identified key hub microbes and microbial genes that are closely associated with host immunological pathways, with particular focus on microbial aminoacyl-tRNA synthetases (aaRSs), which play significant roles in immune cell activation and inflammatory pathways. These findings offer valuable insights into the microbial contributions to inflammation and immune modulation in IBD, highlighting the potential role of aaRSs in regulating immune responses beyond their traditional function in translation. This lays the foundation for future research into host-microbiome interactions in inflammatory diseases and the development of novel therapeutic strategies that target microbial aaRSs to manipulate immune response.

Indexed as

BacteriaColitisGastrointestinal MicrobiomeAmino Acyl-tRNA SynthetasesAnimalsDextran SulfateDisease Models, AnimalInflammatory Bowel DiseasesMetabolic Networks and PathwaysMiceMice, Inbred C57BLMultiomicsTranscriptomeAmino Acyl-tRNA SynthetasesDextran SulfateAminoacyl-tRNA synthetase (aaRS)DSS-induced colitis modelhost-microbiome associationinflammatory bowel diseasemetatranscriptomicssparse canonical correlation analysis

Identifiers

PMID41110987
PMCPMC12549230

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.