Evidence map›Paper›PMID 41110016›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2025

Identification of candidate genes associated with resistance to Heterodera sojae in soybean.

Heonil Kang, Jiyong Song, Hyoung-Rai Ko, Jae Eun Jo, Ji-Hun Hwang, Yeon-Ki Kim, Soo-Kwon Park, Gyu Tae Park, Tae-Hwan Jun, Bo-Keun Ha and 2 more

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

12 authors.

Heonil Kang *Department of Plant Bioscience, Pusan National University, Miryang, 50463, Korea.ORCID http://orcid.org/0000-0002-9858-6593
Jiyong Song *Department of Biosciences and Bioinformatics, Myongji University, Yongin, 17058, Korea.
Hyoung-Rai KoR&D Planning Division, Research Policy Bureau, Rural Development Administration, Jeonju, 54875, Korea.
Jae Eun JoDepartment of Integrative Biological Sciences and Industry, Sejong University, Seoul, 05006, Korea.
Ji-Hun HwangDepartment of Integrative Biological Sciences and Industry, Sejong University, Seoul, 05006, Korea.
Yeon-Ki KimDepartment of Biosciences and Bioinformatics, Myongji University, Yongin, 17058, Korea.
Soo-Kwon ParkNational Institute of Crop and Food Science, Rural Development Administration, Miryang, 50424, Korea.
Gyu Tae ParkNational Institute of Crop and Food Science, Rural Development Administration, Miryang, 50424, Korea.
Tae-Hwan JunDepartment of Plant Bioscience, Pusan National University, Miryang, 50463, Korea.
Bo-Keun HaDepartment of Applied Plant Science, Chonnam National University, Gwangju, 61186, Korea.
Zenglu LiDepartment of Crop and Soil Sciences, and Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, GA, 30602, USA.
Kyung Do KimDepartment of Integrative Biological Sciences and Industry, Sejong University, Seoul, 05006, Korea. kdkim@sejong.ac.kr.ORCID http://orcid.org/0000-0001-5296-2349

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key massageWe identified QTLs and candidate genes associated with resistance to Heterodera sojae and then designed KASP markers from candidate genes on chromosomes 1 and 18 for marker-assisted selection. Heterodera sojae is a recently discovered cyst nematode species that parasitizes soybean roots, reducing soybean growth and yield. However, genes associated with resistance to H. sojae in soybean remain unknown. A genome-wide association study of genes related to resistance to H. sojae was performed with a panel of 385 soybean accessions using an Axiom 180 K SoyaSNP array and whole-genome sequencing data. Thirteen significant single-nucleotide polymorphisms (SNPs) were identified; among them, four SNPs located on chromosomes 1 and 18 were selected to identify candidate resistance genes and develop kompetitive allele-specific PCR (KASP) markers for efficient genotyping. Haplotype analysis revealed 16 candidate genes within two haplotype blocks adjacent to the SNPs that were significantly associated with resistance to H. sojae. The functions of these candidate genes were predicted based on the JGI Plant Gene Atlas, which showed that they were specifically expressed in soybean roots. The KASP markers developed based on these SNPs can be used to perform marker-assisted selection in soybean breeding programs to develop soybean cultivars resistant to H. sojae.

Indexed as

Disease ResistanceGenes, PlantGlycine maxPlant DiseasesTylenchoideaAnimalsChromosome MappingGenetic MarkersGenome-Wide Association StudyGenotypeHaplotypesPolymorphism, Single NucleotideQuantitative Trait LociGenetic Markers

Identifiers

PMID41110016

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.