Evidence map›Paper›PMID 41108577›Full record

ArticlePhysiological reports2025

The pH-dependent photophysical and spectral properties of pH-sensing green fluorescent proteins.

Ian M Thornell

Erratum issuedAbstract read
In one paragraph

Article in Physiological reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

1 author.

Ian M ThornellDepartment of Internal Medicine and Pappajohn Biomedical Institute, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.ORCID 0000-0001-5535-2925

Funding

Receptor-mediated Control of Pulmonary IonocytesR01HL173260 · NHLBI · UNIVERSITY OF IOWA · PI Ian M Thornell · 2025 to 2026
$1.1M
NHLBI NIH HHS R01 HL173260
6 · The paper itself

Abstract

Protonation and deprotonation reactions significantly influence biological function, with buffers and transporters maintaining stable pH levels in the cytosol and various organs. However, pH can vary considerably in organ lumens, such as the airway surface liquid (ASL), which serves as a defense barrier for airways. Traditional microelectrodes, while precise, face limitations prompting the use of fluorescent pH sensors. Although many green fluorescent protein (GFP)-based pH sensors have been reported, data are usually limited to their spectral properties. Photophysical properties are often reported for a single pH value. In this study, the photophysical properties of pHluorins and superfolder GFP-including a novel pH sensor pHluorin4-were compared. Purified pHluorin4 effectively reported ASL pH differences in cystic fibrosis (CF) and non-CF epithelia. These findings provide a comprehensive summary of the photophysical and spectral properties of popular pHluorins, including the new member pHluorin4, which can be used to optimize their application in different systems.

Indexed as

Green Fluorescent ProteinsAnimalsCystic FibrosisHumansHydrogen-Ion ConcentrationGreen Fluorescent ProteinsPHluorinacid‐basefluorescent proteinsGFPpHluorin

Identifiers

PMID41108577
PMCPMC12535197

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.