ArticleGenetica2025
Identification, characterization, and expression profiling of rice MADS-box transcription factor genes associated with fluroxypyr-meptyl and oxyfluorfen metabolism.
Article in Genetica, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
0 citing papers in PubMed.
No citing paper in PubMed yet.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
Abstract
The MADS-box transcription factor (TF) superfamily, one of the largest gene groups in plants, is essential for regulating stress responses. However, its function in rice under pesticide stress remains unknown. To address this gap, we investigated the traits and roles of the rice MADS-box gene family under pesticide exposure. Transcriptome analysis of rice (Oryza sativa) treated with fluroxypyr-meptyl (FLUME) and oxyfluorfen (OFF) revealed 30 OsMADS-box genes and 3 MADS-box differentially expressed genes (DEGs). Phylogenetic analysis classified these genes into 12 subfamilies: Mα, Mβ, Mγ, SOC1, E, A, AGL12, SVP, ANR1, Bs, B, and MIKC*. Chromosomal mapping revealed uneven distribution of OsMADS-box genes across all 12 chromosomes, with segmental duplication contributing to gene family expansion. Collinearity analysis identified 14 orthologous gene pairs within rice and additional orthologous gene pairs shared with other plant species: 4 with Arabidopsis (Arabidopsis thaliana), 17 with soybean (Glycine max), 45 with maize (Zea mays), and 36 with wild sugarcane (Saccharum spontaneum). Structural analysis showed that OsMADS-box genes possess diverse gene architectures, cis-acting elements, motif compositions, and conserved domains, enabling responses to biotic and abiotic stress. Docking studies of OFF, FLUME, and the three MADS-box DEGs identified key amino acid residues implicated in pesticide binding. qRT-PCR confirmed preferential expression of several MADS-box DEGs under OFF- and FLUME-induced stress. Protein-protein interaction network analysis further supported the involvement of OsMADS-box proteins in FLUME and OFF metabolism. These findings provide insights into the OsMADS-box superfamily and offer valuable resources for functional studies on their roles in pesticide metabolism.
Indexed as
Identifiers
41108492What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.