Evidence map›Paper›PMID 41107713›Full record

ArticleBMC microbiology2025

Functional genomics and phenotypic characterization of PGP and biocontrol traits of rhizospheric Streptomyces spp. from Mexican milpa agroecosystem.

Lizbeth Vazquez-Hernandez, Esau De la Vega-Camarillo, Juan Alfredo Hernández-García, Lourdes Villa-Tanaca, César Hernández-Rodríguez

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lizbeth Vazquez-HernandezLaboratorio de Biología Molecular de Bacterias y Levaduras, Department of Microbiology, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Ciudad de México, Mexico.ORCID 0009-0002-6116-9320
Esau De la Vega-CamarilloLaboratorio de Biología Molecular de Bacterias y Levaduras, Department of Microbiology, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Ciudad de México, Mexico.ORCID 0000-0002-2408-7986
Juan Alfredo Hernández-GarcíaLaboratorio de Biología Molecular de Bacterias y Levaduras, Department of Microbiology, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Ciudad de México, Mexico.
Lourdes Villa-TanacaLaboratorio de Biología Molecular de Bacterias y Levaduras, Department of Microbiology, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Ciudad de México, Mexico.ORCID 0000-0003-0055-2991
César Hernández-RodríguezLaboratorio de Biología Molecular de Bacterias y Levaduras, Department of Microbiology, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Ciudad de México, Mexico. chdez38@hotmail.com.ORCID 0000-0003-2411-9789

Funding

Secretaría de Investigación y Posgrado, Instituto Politécnico Nacional , México SIP 20220795, 20231480, and 20240945
6 · The paper itself

Abstract

The traditional Mesoamerican milpa is an ancient agroecosystem with significant cultural and economic importance, commonly practiced by indigenous and rural communities for subsistence agriculture. Recognized for their diversity and sustainability, milpas utilize local resources and help preserve biodiversity. This ecosystem includes various plants of American origin, which establish numerous beneficial ecological relationships and promote interactions between plants and microbes. In this study, a collection of Streptomyces strains was isolated from the rhizosphere of native Cacahuacintle maize, squash, fava bean, and huauzontle. These strains exhibited various in vitro plant growth-promoting (PGP) activities, including ammonium production, phosphate solubilization, and siderophore production. Notably, Streptomyces sp. FR-108, isolated from the fava bean rhizosphere, and Streptomyces griseus MR-45, isolated from maize, increased maize biomass in a short-term greenhouse assay. Among the other strains, Streptomyces anulatus SR-10 from squash and Streptomyces albidoflavus MR-37 from maize demonstrated in vitro extracellular enzyme secretion and antagonistic activities against phytopathogenic fungi. Comparative and functional genomic analyses of these strains revealed their typical size, topology, and G + C content characteristic of Streptomyces genomes. Additionally, a substantial repertoire of genes involved in plant growth promotion was identified, contributing to nutrient acquisition, tolerance to osmotic, drought, chemical, and temperature stresses, as well as mutualistic interactions with plants and biocontrol of fungi, bacteria, insects, and protists. While no studies have previously focused on Streptomyces as plant growth-promoting bacteria (PGPB) in milpa agroecosystems, this genus shows potential as a bioinoculant for sustainable or extensive agriculture. This underscores the significance of traditional agroecosystems as sources of beneficial microorganisms.

Indexed as

RhizosphereSoil MicrobiologyStreptomycesBiological Control AgentsGenome, BacterialGenomicsMexicoPhenotypePhylogenyPlant RootsRNA, Ribosomal, 16SZea maysBiological Control AgentsRNA, Ribosomal, 16SComparative genomicMilpaNative maizePhytopathogen fungiPlant growth promotionStreptomyces

Identifiers

PMID41107713
PMCPMC12532929

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.