Evidence map›Paper›PMID 41107595›Full record

ArticleNature cardiovascular research2025

PRDM16 regulates smooth muscle cell identity and atherosclerotic plaque composition.

Josephine M E Tan, Lan Cheng, Ryan P Calhoun, Angela H Weller, Karima Drareni, Skylar Fong, Eirlys Barbara, Hee-Woong Lim, Chenyi Xue, Hanna Winter and 6 more

Abstract read
In one paragraph

Article in Nature cardiovascular research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Coronary artery disease risk gene PRDM16 regulates smooth muscle homeostasis.Journal of molecular and cellular cardiology · 2026
    Article
  7. Review
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Josephine M E TanInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA. j.m.e.tan@amsterdamumc.nl.ORCID http://orcid.org/0000-0003-2534-3029
Lan ChengInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-0572-6148
Ryan P CalhounInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA.
Angela H WellerInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA.
Karima DrareniInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA.
Skylar FongInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA.
Eirlys BarbaraInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA.
Hee-Woong LimDepartment of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0001-8599-1808
Chenyi XueDivision of Cardiology, Department of Medicine, Columbia University Irving Medical Center, Irving Institute for Clinical and Translational Research, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-8829-7659
Hanna WinterInstitute of Molecular Vascular Medicine, University Hospital rechts der Isar, Technical University Munich, Munich, Germany.ORCID http://orcid.org/0000-0001-8110-8627
Gaëlle AugusteDepartment of Genome Sciences, Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA, USA.ORCID http://orcid.org/0000-0003-4900-6959
Clint L MillerDepartment of Genome Sciences, Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA, USA.ORCID http://orcid.org/0000-0003-4276-3607
Muredach P ReillyDivision of Cardiology, Department of Medicine, Columbia University Irving Medical Center, Irving Institute for Clinical and Translational Research, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-3035-9386
Lars MaegdefesselInstitute of Molecular Vascular Medicine, University Hospital rechts der Isar, Technical University Munich, Munich, Germany.ORCID http://orcid.org/0000-0001-5228-2634
Esther LutgensExperimental Cardiovascular Immunology Laboratory, Department of Cardiovascular Medicine and Immunology, Mayo Clinic, Rochester, MN, USA.ORCID http://orcid.org/0000-0002-2609-5744
Patrick SealeInstitute for Diabetes, Obesity and Metabolism, University of Pennsylvania, Philadelphia, PA, USA. sealep@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0001-7119-1615

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Functional Interrogation of T2D-associated genes in human stem cell-derived models and miceUM1DK126194 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GRANT, STRUAN F A, KAESTNER, KLAUS H · 2020 to 2024
$8.8M
Multimodal genetic regulatory architecture of coronary artery diseaseR01HL148239 · NHLBI · UNIVERSITY OF VIRGINIA · PI Clint L Miller · 2019 to 2026
$4.2M
Regulation of Mesenchymal Progenitor Cell Fate and Adipose Tissue RemodelingR01DK120982 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Patrick Seale · 2019 to 2026
$3.7M
Smooth muscle cell-derived cell fates and cellular interactions in atherosclerotic plaque stability in disease progression and regression.R01HL166916 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Muredach P Reilly · 2023 to 2026
$2.8M
Computational and functional strategies to decipher lncRNAs in human atherosclerosisR01HL150359 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LI, MINGYAO, REILLY, MUREDACH P · 2020 to 2023
$2.7M
Identification of smooth muscle cell genes causal in atherosclerotic plaque stability and cardiovascular disease riskR01HL169766 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Muredach P Reilly, Danish Saleheen · 2023 to 2026
$2.6M
Functional genomics investigation of pleiotropic vascular disease lociR01HL164577 · NHLBI · UNIVERSITY OF VIRGINIA · PI MILLER, CLINT L · 2022 to 2025
$2.3M
Metabolic Control of Adipose Tissue Remodeling and FibrosisR01DK123356 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SEALE, PATRICK · 2019 to 2022
$1.9M
NCATS NIH HHS UL1 TR001873NHLBI NIH HHS R01 HL148239NHLBI NIH HHS R01 HL150359NHLBI NIH HHS R01 HL164577NHLBI NIH HHS R01 HL166916NHLBI NIH HHS R01 HL169766NIDDK NIH HHS R01 DK120982NIDDK NIH HHS R01 DK123356NIDDK NIH HHS UM1 DK126194U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL148239U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL150359U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL164577U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL166916U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL169766U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) DK120982U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) DK123356U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) DK126194ZonMw (Netherlands Organisation for Health Research and Development) 40-45200-98-21118
6 · The paper itself

Abstract

Vascular smooth muscle cells (SMCs) undergo phenotype switching to acquire various fates in response to pathological stimuli. Among these, 'synthetic' SMCs-defined by migration, proliferation and extracellular matrix production-accumulate in atherosclerotic lesions and contribute to fibrous cap formation. The mechanisms driving this synthetic transition remain unclear. Here we identify PRDM16, a gene linked to cardiovascular disease, as a critical transcriptional repressor of the synthetic SMC phenotype. PRDM16 expression declined during SMC modulation, and its deletion in mice induced a synthetic program across all SMC subtypes even without pathological stimuli. Under atherogenic conditions, PRDM16 deficiency resulted in the formation of fibroproliferative plaques with more synthetic SMCs and fewer foam cells. Conversely, enforced PRDM16 expression suppressed SMC migration, proliferation and fibrosis. Mechanistically, PRDM16 occupied chromatin and suppressed activating marks at synthetic loci. These findings establish PRDM16 as a gatekeeper of SMC fate and reveal its role in shaping atherosclerotic plaque composition.

Indexed as

AtherosclerosisDNA-Binding ProteinsMuscle, Smooth, VascularMyocytes, Smooth MusclePlaque, AtheroscleroticTranscription FactorsAnimalsCell MovementCell ProliferationCells, CulturedDisease Models, AnimalFibrosisFoam CellsGene Expression RegulationHumansMaleDNA-Binding ProteinsPrdm16 protein, mouseTranscription Factors

Identifiers

PMID41107595
PMCPMC12611775

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.