Evidence map›Paper›PMID 41105767›Full record

ArticleScience advances2025

Integrated spatial morpho-transcriptomics predicts functional traits in pancreatic cancer.

Dennis Gong, Rachel Liu, Yi Cui, Michael Rhodes, Jung Woo Bae, Joseph M Beechem, William L Hwang

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Dennis GongDivision of Health Sciences and Technology, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.ORCID 0000-0002-1892-8312
Rachel LiuBruker Technologies, Inc., Seattle, WA, USA.ORCID 0000-0002-9222-142X
Yi CuiBruker Technologies, Inc., Seattle, WA, USA.ORCID 0000-0002-8597-0174
Michael RhodesBruker Technologies, Inc., Seattle, WA, USA.
Jung Woo BaeCenter for Systems Biology, Department of Radiation Oncology, and Krantz Family Center for Cancer Research, Harvard Medical School and Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0001-5745-4896
Joseph M BeechemBruker Technologies, Inc., Seattle, WA, USA.ORCID 0000-0001-8372-5899
William L HwangCenter for Systems Biology, Department of Radiation Oncology, and Krantz Family Center for Cancer Research, Harvard Medical School and Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0003-4514-8837

Funding

Elucidating cancer-intrinsic mechanisms of perineural invasion in pancreatic cancerK08CA270417 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI William L Hwang · 2022 to 2026
$1.6M
NCI NIH HHS K08 CA270417
6 · The paper itself

Abstract

Analyses of patient-derived cell lines have greatly enhanced discovery of molecular biomarkers and therapeutic targets. However, characterization of cellular morphological properties is limited. We studied cell morphologies of human pancreatic adenocarcinoma (PDAC) cell lines and their associations with drug sensitivity, gene expression, and functional properties. By integrating live cell and spatial messenger RNA imaging, we identified KRAS inhibitor-induced morphological changes specific for drug-resistant cells that correlated with gene expression changes. We then categorized a large panel of patient-derived PDAC cell lines into morphological and organizational subtypes and found differences in gene expression, therapeutic targeting potential, and metastatic proclivity. Patterns of cancer cell organization in human PDAC tissues stratified distinct gene expression signatures with clinical significance. In summary, we highlight the potential of cell morphological information in rapid, cost-effective assays to aid precision oncology efforts leveraging patient-derived in vitro models and tissues.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsProto-Oncogene Proteins p21(ras)Spatial TranscriptomicsAntineoplastic AgentsBiomarkers, TumorCell Line, TumorCost-Effectiveness AnalysisDrug Resistance, NeoplasmGene Expression Regulation, NeoplasticHeterocyclic Compounds, 2-RingHumansNaphthalenesPiperazinesPrecision MedicineSingle-Cell AnalysisAntineoplastic AgentsBiomarkers, TumorHeterocyclic Compounds, 2-RingKRASG12D inhibitor MRTX1133KRAS protein, humanNaphthalenesPiperazinesProto-Oncogene Proteins p21(ras)RAS Inhibitor A122

Identifiers

PMID41105767
PMCPMC12533583

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.