Evidence map›Paper›PMID 41104427›Full record

ArticleFrontiers in plant science2025

Unveiling the complete organelle genomes of

Chaoqiang Zhang, Ruifeng Yang, Mengyue Wang, Jiayin Zhang, Jingting Shen, Bin Yang, Dongzhi Zhang, Liang Yin, Xiaoming Wang, Chien-Hsun Huang and 1 more

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Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chaoqiang ZhangKey Laboratory of Hexi Corridor Resources Utilization of Gansu, College of Life Sciences and Engineering, Hexi University, Zhangye, Gansu, China.
Ruifeng YangState Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, Inner Mongolia, China.
Mengyue WangState Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, Inner Mongolia, China.
Jiayin ZhangMinistry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Institute of Biodiversity Science, Fudan University, Shanghai, China.
Jingting ShenShanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Bin YangKey Laboratory of Hexi Corridor Resources Utilization of Gansu, College of Life Sciences and Engineering, Hexi University, Zhangye, Gansu, China.
Dongzhi ZhangKey Laboratory of Hexi Corridor Resources Utilization of Gansu, College of Life Sciences and Engineering, Hexi University, Zhangye, Gansu, China.
Liang YinCollege of Agriculture and Ecological Engineering, Hexi University, Zhangye, Gansu, China.
Xiaoming WangCollege of Agriculture and Ecological Engineering, Hexi University, Zhangye, Gansu, China.
Chien-Hsun HuangState Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, Inner Mongolia, China.
Jinglong LiState Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, Inner Mongolia, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Methods: We assembled the complete mitochondrial (361,814 bp) and quadripartite chloroplast (150,050 bp) genomes of Results: HiFi-based assembly revealed exceptional mitochondrial genome plasticity, with 15.6% (56.7 Kb) derived from chloroplast DNA transfers-the highest reported in Caryophyllaceae-including 12 functional genes (e.g., rps7, ndhB, rrn16S). Both organellar genomes show A/U-biased codon usage (mitochondrial RSCU: 29/44 codons) and divergent RNA editing (257 mitochondrial vs. 105 chloroplast C-to-U sites). Positive selection (Ka/Ks > 1) was detected in cytochrome c maturation genes (ccmFN, ccmB, ccmFC), contrasting with overall purifying selection (median ω = 0.32). Phylogenomic analyses robustly resolved Caryophyllaceae-Amaranthaceae sisterhood (BS = 100%). Discussion: As the first organellar genomes from Gypsophila, this study provides insights into lineage-specific adaptations through chloroplast-mitochondrial co-evolution. The 56.7 Kb MTPTs and positively selected cytochrome c genes serve as targets for adaptive evolution research, while 81 species-specific SSRs facilitate molecular marker development in Caryophyllaceae.

Indexed as

chloroplast genomeGypsophila vaccariamitochondrial genomephylogenetic analysisRNA editing events

Identifiers

PMID41104427
PMCPMC12521989

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.