MDA-MB-231 breast cancer cells adapted to anchorage-independent growth reveal senescent-like phenotype and persistent downregulation of PD-L1 expression.

Introduction: Metastasis remains the primary cause of mortality in breast cancer, particularly in aggressive triple-negative (TNBC) subtypes. A crucial yet understudied aspect of this process involves cancer cell survival in a detached state and subsequent reattachment at distant sites. While Methods: We generated clones of MDA-MB-231 TNBC cells through consecutive selection for enhanced anchorage-independent survival. This was achieved using 2-deoxy-D-glucose (2DG) alone, 2DG combined with metformin, or Poly(2-hydroxyethyl methacrylate) (polyHEMA)-coated surfaces. The resulting adapted clones were characterized by RNA transcriptomics, comparing them to one-time treated non-selected cells. Real-time cellular energy metabolism was assessed via Seahorse analysis, while mitochondrial mass and intracellular localization were determined by flow cytometry and fluorescent microscopy, respectively. Results: Transcriptomic analysis of the MDA-MB-231 clones adapted to anchorage-independent growth revealed distinct alterations in gene expression, confirmed by principal component analysis showing clear separation from control clusters. These adapted clones exhibited increased mesenchymal and stemness markers, downregulated cell cycle genes, and a senescent-like phenotype. Interestingly, while nuclear-encoded oxidative phosphorylation (OxPhos) genes were downregulated, mitochondrial-encoded OxPhos genes were upregulated, with no significant shift in overall ATP production as measured by Seahorse analysis. Paradoxically, despite increased Discussion: Our adapted clones provide a novel