Evidence map›Paper›PMID 41102986›Full record

ArticleJournal of proteome research2025

Profiling the Cellular Surfaceome by Furan-Based Protein Biotinylation.

Esperanza Fernández, Laia Miret-Casals, Annemieke Madder, Kris Gevaert

Abstract read
In one paragraph

Article in Journal of proteome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. 2-Alkyl Furans Undergo Radiolytic Oxidative Protein Cross-Linking.Journal of the American Chemical Society · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Esperanza FernándezVIB Center for Medical Biotechnology, VIB, B-9052 Ghent, Belgium.ORCID 0000-0001-6674-2494
Laia Miret-CasalsVIB Center for Medical Biotechnology, VIB, B-9052 Ghent, Belgium.
Annemieke MadderOrganic and Biomimetic Chemistry Research Group, Department of Organic and Macromolecular Chemistry, Ghent University, Krijgslaan 281-S4, B-9000 Ghent, Belgium.ORCID 0000-0003-0179-7608
Kris GevaertVIB Center for Medical Biotechnology, VIB, B-9052 Ghent, Belgium.ORCID 0000-0002-4237-0283

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cellular surfaceome is crucial for cellular homeostasis and communication, with surface proteins acting as receptors, transporters, and enzymes. However, comprehensive analysis of the surfaceome is challenging due to the hydrophobic nature and low abundance of membrane proteins, leading to their underrepresentation in mass spectrometry-based proteomics data. This study exploits a novel method for profiling the cellular surfaceome using furan chemistry. We synthesized six furan-biotin compounds (FB1-FB6) and showed that FB1 reacts with lysine and cysteine. Upon furan activation by oxidation, FB1 exhibited the highest staining intensity and specificity for cell surface proteins. Pull-downs of biotinylated proteins further confirmed the efficiency of FB1 in enriching cell surface proteins, and FB1 was also found to reduce nonspecific labeling of intracellular proteins compared to biotinylation methods using

Indexed as

BiotinBiotinylationFuransMembrane ProteinsProteomeProteomicsCysteineHumansLysineOxidation-ReductionBiotinCysteinefuranFuransLysineMembrane ProteinsProteomeaffinity purificationcellular surfaceomefuran-biotinLC−MSMSplasma membrane proteinsproteomics

Identifiers

PMID41102986
PMCPMC12604038

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.