Evidence map›Paper›PMID 41102879›Full record

ArticleMagnetic resonance in medicine2026

A Digital Phantom for MR Spectroscopy Data Simulation.

D M J van de Sande, A T Gudmundson, S Murali-Manohar, C W Davies-Jenkins, D Simicic, G Simegn, I Özdemir, S Amirrajab, J P Merkofer, H J Zöllner and 2 more

Abstract read
In one paragraph

Article in Magnetic resonance in medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. A Digital Phantom for MR Spectroscopy Data Simulation.Magnetic resonance in medicine · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

D M J van de SandeDepartment of Biomedical Engineering, Eindhoven University of Technology, Eindhoven, the Netherlands.ORCID https://orcid.org/0000-0001-6112-1437
A T GudmundsonRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID https://orcid.org/0000-0001-5104-0959
S Murali-ManoharRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
C W Davies-JenkinsRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
D SimicicRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
G SimegnRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
I ÖzdemirRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
S AmirrajabDepartment of Biomedical Engineering, Eindhoven University of Technology, Eindhoven, the Netherlands.
J P MerkoferDepartment of Electrical Engineering, Eindhoven University of Technology, Eindhoven, the Netherlands.
H J ZöllnerRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID https://orcid.org/0000-0002-7148-292X
G OeltzschnerRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.ORCID https://orcid.org/0000-0003-3083-9811
R A E EddenRussell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.

Funding

Sleep and Circadian Dysfunction, Brain and Neurobehavioral Development in AutismP50HD103538 · NICHD · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI Stewart H Mostofsky · 2020 to 2026
$9.9M
TRD 4: Platforms for multi-modal and multi-scale imaging dataP41EB031771 · NIBIB · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI Hanzhang Lu, Peter CM Van Zijl · 2021 to 2026
$9.9M
Universal GABA-edited MRS at 3TR01EB016089 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI Richard Anthony Edward Edden · 2013 to 2026
$5.4M
Simultaneous Hadamard Editing of GABA and GlutathioneR01EB023963 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI EDDEN, RICHARD ANTHONY EDWARD · 2017 to 2024
$3.8M
Edited Magnetic Resonance Spectroscopy of the Pediatric BrainR01EB032788 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI Richard Anthony Edward Edden · 2023 to 2026
$2.7M
NIBIB NIH HHS P41 EB031771NIBIB NIH HHS R01 EB016089NIBIB NIH HHS R01 EB023963NIBIB NIH HHS R01 EB032788NICHD NIH HHS P50 HD103538Spectralligence (EUREKA AI Call, ITEA4 project) 20209
6 · The paper itself

Abstract

purposeSimulated data is increasingly valued by researchers for validating MRS processing and analysis algorithms. However, there is no consensus on the optimal approaches for simulation models and parameters. This study introduces a novel MRS digital brain phantom framework, providing a comprehensive and modular foundation for MRS data simulation.

methodsThe framework generates a digital brain phantom by combining anatomical and tissue label information with metabolite data from the literature. This phantom contains all necessary information for simulating spectral data. The MRS phantom is combined with a signal-based model to demonstrate its functionality and usability in generating various spectral datasets. Outputs can be saved in the NIfTI-MRS format, enabling their use in downstream applications. To evaluate the realism of the simulated spectra, a comparison was performed against in vivo MRS data acquired under similar conditions.

resultsThe phantom was implemented using two anatomical templates at different resolutions and tested across a range of user-defined simulation parameters. Simulated spectra exhibited realistic signal characteristics and structural variability. When compared to in vivo data, the simulated spectra closely matched in terms of spectral shape, signal-to-noise ratio, and metabolite quantification. The simulations also captured key variability features and provided additional diversity not present in the in vivo dataset, supporting use in robustness testing and data augmentation.

conclusionThis novel digital phantom provides a flexible and extensible platform for MRS data simulation. Its modular architecture, user-friendly GUI, and open-source implementation support reproducible research, algorithm development, and validation in the MRS community.

Indexed as

BrainPhantoms, ImagingAlgorithmsComputer SimulationHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMagnetic Resonance SpectroscopySignal-To-Noise Ratiodigital phantomMRSsynthetic data generation

Identifiers

PMID41102879
PMCPMC12746399

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.