Evidence map›Paper›PMID 41102205›Full record

ArticleNature communications2025

DNA StairLoop: enabling high-fidelity data recovery and robust error correction in DNA-based data storage.

Zihui Yan, Guanjin Qu, Xin Chen, Gang Zheng, Huaming Wu

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zihui Yan *Center for Applied Mathematics, Tianjin University, Tianjin, China.
Guanjin Qu *Center for Applied Mathematics, Tianjin University, Tianjin, China.
Xin ChenCenter for Applied Mathematics, Tianjin University, Tianjin, China.
Gang ZhengNational Supercomputer Center in Tianjin, Tianjin, China.
Huaming WuCenter for Applied Mathematics, Tianjin University, Tianjin, China. whming@tju.edu.cn.ORCID http://orcid.org/0000-0002-4761-9973

Funding

China Postdoctoral Science Foundation 2024M752377 and 2024T018TJ
6 · The paper itself

Abstract

High-throughput electrochemical synthesis is an emerging DNA synthesis technology that has attracted considerable attention due to its scalability and cost-effectiveness. However, its high error rates and poor synthesis uniformity pose significant challenges for applications in DNA data storage, where high fidelity is essential. In this study, we present StairLoop, a coding scheme designed to address these error characteristics, providing robust error-correcting capabilities. Validated through in-vitro experiments, StairLoop successfully recovers original data under harsh conditions, including nucleotide error rates exceeding 6% or dropout rates over 30% within a block, with sequencing depths of less than 3x . Moreover, the simulation results show that StairLoop can achieve an error correction capability of 10% at the mean coverage rate of 15x. These results highlight StairLoop's potential to enhance the reliability and practicality of electrochemical DNA synthesis for data storage applications.

Indexed as

DNAInformation Storage and RetrievalElectrochemical TechniquesHigh-Throughput Nucleotide SequencingReproducibility of ResultsSequence Analysis, DNADNA

Identifiers

PMID41102205
PMCPMC12533179

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.