Evidence map›Paper›PMID 41102163›Full record

ArticleNature communications2025

Chromatin remodeling restrains oncogenic functions in prostate cancer.

Valentina Rosti, Giovanni Lembo, Cristiano Petrini, Francesca Gorini, Roberto Quadri, Chiara Cordiglieri, Margherita Mutarelli, Elisa Salviato, Elisabetta Casari, Emanuele Di Patrizio Soldateschi and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Valentina Rosti *ITB-CNR, Institute of Biomedical Technologies, National Research Council, Segrate, Italy. rosti@ingm.org.
Giovanni Lembo *IFOM-ETS, The AIRC Institute of Molecular Oncology, Milan, Italy.
Cristiano Petrini *IFOM-ETS, The AIRC Institute of Molecular Oncology, Milan, Italy.ORCID http://orcid.org/0000-0002-7727-7230
Francesca GoriniINGM Istituto Nazionale Genetica Molecolare "Romeo ed Enrica Invernizzi", Milan, Italy.
Roberto QuadriINGM Istituto Nazionale Genetica Molecolare "Romeo ed Enrica Invernizzi", Milan, Italy.
Chiara CordiglieriINGM Istituto Nazionale Genetica Molecolare "Romeo ed Enrica Invernizzi", Milan, Italy.ORCID http://orcid.org/0000-0002-2013-0043
Margherita MutarelliISASI-CNR, Institute of Applied Science and Intelligent Systems, National Research Council, Pozzuoli, Italy.ORCID http://orcid.org/0000-0002-2168-5059
Elisa SalviatoIFOM-ETS, The AIRC Institute of Molecular Oncology, Milan, Italy.ORCID http://orcid.org/0000-0003-3246-7820
Elisabetta CasariDivision of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Emanuele Di Patrizio SoldateschiITB-CNR, Institute of Biomedical Technologies, National Research Council, Segrate, Italy.ORCID http://orcid.org/0000-0002-3091-4386
Emanuele MontanariDepartment of Clinical Sciences and Community Health, University of Milan, Milan, Italy.
Giancarlo AlboDepartment of Clinical Sciences and Community Health, University of Milan, Milan, Italy.
Francesco RipaDepartment of Clinical Sciences and Community Health, University of Milan, Milan, Italy.
Alessandra FascianiINGM Istituto Nazionale Genetica Molecolare "Romeo ed Enrica Invernizzi", Milan, Italy.
Mariacristina CrostiINGM Istituto Nazionale Genetica Molecolare "Romeo ed Enrica Invernizzi", Milan, Italy.
Elisa De LorenzisDepartment of Clinical Sciences and Community Health, University of Milan, Milan, Italy.
Marco MaggioniDivision of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Valentina VairaDivision of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.ORCID http://orcid.org/0000-0003-4416-6216
Maria VivoDepartment of Chemistry and Biology "A. Zambelli", University of Salerno, Fisciano, Italy.ORCID http://orcid.org/0000-0003-2458-4226
Francesco FerrariIFOM-ETS, The AIRC Institute of Molecular Oncology, Milan, Italy. francesco.ferrari@cnr.it.ORCID http://orcid.org/0000-0002-9811-3753
Chiara LanzuoloITB-CNR, Institute of Biomedical Technologies, National Research Council, Segrate, Italy. chiara.lanzuolo@cnr.it.ORCID http://orcid.org/0000-0003-2649-6334

Funding

Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) 16841Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) 18535Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) 22351Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) 26942Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) 31282-2024Consiglio Nazionale delle Ricerche (National Research Council) Interomics
6 · The paper itself

Abstract

Primary prostate cancer presents with multifocal lesions and unpredictable clinical behavior, posing significant challenges for effective prognosis. To address this, we investigate the epigenomic landscape of prostate tumor biopsies from 25 treatment-naïve male patients by analyzing chromatin compartmentalization patterns. Our analysis reveals two distinct molecular subtypes: one with a Low Degree of Decompartmentalization (LDD) and another with a High Degree of Decompartmentalization (HDD). Here we show that the HDD subgroup exhibits extensive chromatin reorganization associated with diminished oncogenic potential. This subtype shows repression of molecular pathways involved in extracellular matrix remodeling and cellular plasticity. From this distinction, we derive an 18-gene transcriptional signature capable of differentiating HDD from LDD cases. Importantly, we validate the prognostic relevance of this signature in multiple independent cohorts totaling over 900 patients. Our findings suggest that epigenetic-derived signature at the time of diagnostic biopsy can offer a powerful tool for risk stratification in prostate cancer.

Indexed as

CarcinogenesisChromatin Assembly and DisassemblyProstatic NeoplasmsAgedChromatinEpigenesis, GeneticGene Expression Regulation, NeoplasticHumansMaleMiddle AgedPrognosisProstateChromatin

Identifiers

PMID41102163
PMCPMC12531332

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.