Evidence map›Paper›PMID 41099707›Full record

ArticleNucleic acids research2025

Adsorption of phage T2 is inhibited due to inversion of cryptic prophage DNA by the serine recombinase PinQ.

Joy Kirigo, Daniel Huelgas-Méndez, María Tomás, Michael J Benedik, Rodolfo García-Contreras, Thomas K Wood

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joy KirigoDepartment of Chemical Engineering, Pennsylvania State University, University Park, PA 16802-4400, United States.
Daniel Huelgas-MéndezDepartment of Chemical Engineering, Pennsylvania State University, University Park, PA 16802-4400, United States.
María TomásMicrobiology Translational and Multidisciplinary (MicroTM)-Research Institute Biomedical A Coruña (INIBIC) and Microbiology Department of Hospital A Coruña (CHUAC); University of A Coruña (UDC), A Coruña, 15006, Spain.ORCID 0000-0003-4501-0387
Michael J BenedikDepartment of Biology, Texas A&M University, College Station, TX 77843-3258, United States.
Rodolfo García-ContrerasDepartment of Chemical Engineering, Pennsylvania State University, University Park, PA 16802-4400, United States.ORCID 0000-0001-8475-2282
Thomas K WoodDepartment of Chemical Engineering, Pennsylvania State University, University Park, PA 16802-4400, United States.ORCID 0000-0002-6258-529X

Funding

Biotechnology EndowmentDGAPAPennsylvania State UniversitySECIHTI 1103451UNAM IN200224
6 · The paper itself

Abstract

Recombinases catalyze site-specific integration, excision, and inversion of DNA and are often found adjacent to anti-phage system genes clustered in defense islands; however, their function in phage defense is unknown, as they are frequently dismissed as markers of prophages. Here, we characterize the physiological role of the previously uncharacterized serine recombinase PinQ (P segment inversion by Qin) of Escherichia coli cryptic prophage Qin and discover that it inhibits T2 phage infection by inverting a 1797 bp segment in a different cryptic prophage e14; this inversion leads to the formation of a novel protein from two chimeric genes, StfE2, that we find blocks phage adsorption. Modeling shows StfE2 inhibits T2 phage adsorption by preventing Gp38 binding to its primary receptors, porins FadL and OmpF. Corroborating the receptor-blocking hypothesis, T2 escape mutants evolve resistance to PinQ anti-phage defense by mutating gp38 in the hypervariable region 3. Therefore, we discovered the first recombinase-activated phage inhibition system.

Indexed as

Escherichia coli ProteinsProphagesRecombinasesT-PhagesViral ProteinsDNA, ViralEscherichia coliPorinsDNA, ViralEscherichia coli ProteinsOmpF proteinPorinsRecombinasesViral Proteins

Identifiers

PMID41099707
PMCPMC12529663

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.