Evidence map›Paper›PMID 41099702›Full record

ArticleNucleic acids research2025

Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly.

Serafin U Colmenares, Shingo Tsukamoto, Collin Hickmann, Lucy D Brennan, Mohammad Khavani, Mohammad R K Mofrad, Gary H Karpen

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Serafin U ColmenaresDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, United States.ORCID 0000-0002-4094-4220
Shingo TsukamotoMolecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, CA 94720, United States.ORCID 0009-0009-2970-3387
Collin HickmannDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, United States.ORCID 0009-0001-8587-0448
Lucy D BrennanDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, United States.ORCID 0000-0002-4019-6904
Mohammad KhavaniMolecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, CA 94720, United States.ORCID 0000-0003-1883-8701
Mohammad R K MofradMolecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, CA 94720, United States.ORCID 0000-0001-7004-4859
Gary H KarpenDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, United States.ORCID 0000-0003-1534-0385

Funding

Interplay Between Nuclear Organization and FunctionR35GM139653 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KARPEN, GARY H · 2021 to 2025
$4.4M
Hearts To Humanity Eternal (H2H8)Japan Student Services OrganizationNational Science Foundation BIO230220NIGMS NIH HHS R35 GM139653NIH HHS R35GM139653SAITAMA GO GLOBAL STUDENT
6 · The paper itself

Abstract

The recruitment of Heterochromatin Protein 1 (HP1) partners is essential for heterochromatin assembly and function, yet our knowledge regarding their organization in heterochromatin remains limited. Here, we show that interactors engage the DrosophilaHP1 (HP1a) dimer through a degenerate and expanded form of the previously identified PxVxL motif, which we now term HP1a Access Codes (HACs). These HACs reside in disordered regions, possess high conservation among Drosophilahomologs, and contain alternating hydrophobic residues nested in a cluster of positively charged amino acids. These findings and molecular dynamics simulations identify key electrostatic interactions that modulate HP1a-binding strength and provide a dramatically improved HP1a-binding consensus motif that can reveal protein partners and the molecular grammar involved in heterochromatin assembly. We propose HP1a acts as a scaffold for other heterochromatin components containing HAC motifs, which in turn regulate the function and higher order structure of the heterochromatin compartment.

Indexed as

Chromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDrosophila ProteinsHeterochromatinAmino Acid MotifsAmino Acid SequenceAnimalsBinding SitesChromobox Protein Homolog 5Consensus SequenceDrosophila melanogasterMolecular Dynamics SimulationProtein BindingChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDrosophila ProteinsHeterochromatin

Identifiers

PMID41099702
PMCPMC12526061

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.